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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086758 through 18771 annotations produced 3 hits



Chronologically inappropriate morphogenesis (chinmo):

Annotation Number : CT30433
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086758
Gbrowse : chr2L:1667846-1678921 (+) // 100.0 //
Probeset : 1636985_s_at
Accessions : protein= NP_608610; /// NP_722717; /// NP_722718; /// NP_722719;, nucleotide= NM_134766; /// NM_164428; /// NM_164429; /// NM_164430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0086758.
TRiP has 3 RNAi stocks for FBgn0086758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 02 of 4 6.60Up
Head1 00 of 4 1.50None
Eye1 10 of 4 2.39None
Thoracicoabdominal ganglion4 10 of 4 6.50None
Salivary gland12 30 of 417.54Up
Crop2 20 of 4 4.20None
Midgut0 00 of 4 1.00None
Tubule2 00 of 4 3.00Up
Hindgut2 00 of 4 3.20None
Heart3 11 of 4 4.57None
Fat body7 11 of 410.54Up
Ovary0 00 of 4 0.80None
Testis1 00 of 4 1.50None
Male accessory glands2 10 of 4 4.00None
Virgin spermatheca1 00 of 4 1.50None
Mated spermatheca4 10 of 4 5.82None
Adult carcass2 10 of 4 4.10None
Larval CNS7 14 of 410.57Up
Larval Salivary gland10 01 of 415.36Up
Larval midgut1 00 of 4 1.71None
Larval tubule3 10 of 4 5.20None
Larval hindgut4 01 of 4 6.07Up
Larval fat body4 20 of 4 5.90None
Larval trachea14 24 of 420.64Up
Larval carcass1 00 of 4 2.25None
S2 cells (growing)6 00 of 4 9.57Up
Whole fly0 00 of 4



Chronologically inappropriate morphogenesis (chinmo):

Annotation Number : CG31666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086758
Gbrowse : chr2L:1667846-1698617 (+) // 99.76 //
Probeset : 1628005_at
Accessions : protein= NP_608610; /// NP_722717; /// NP_722718; /// NP_722719;, nucleotide= NM_134766; /// NM_164428; /// NM_164429; /// NM_164430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0086758.
BioGrid reports that CG31666 interacts with CG32016 CG3382 CG3771 .
TRiP has 3 RNAi stocks for FBgn0086758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 74 of 417.10Up
Head33 34 of 4 2.40Up
Eye52 44 of 4 3.76Up
Thoracicoabdominal ganglion160 34 of 411.40Up
Salivary gland11 20 of 4 0.80None
Crop3 10 of 4 0.30Down
Midgut15 21 of 4 1.10None
Tubule33 14 of 4 2.40Up
Hindgut9 12 of 4 0.70None
Heart41 54 of 4 2.97Up
Fat body15 74 of 4 1.11None
Ovary3 01 of 4 0.30Down
Testis83 14 of 4 6.00Up
Male accessory glands4 10 of 4 0.30Down
Virgin spermatheca23 44 of 4 1.67None
Mated spermatheca22 73 of 4 1.63None
Adult carcass6 10 of 4 0.50Down
Larval CNS534 244 of 438.09Up
Larval Salivary gland122 124 of 4 8.71Up
Larval midgut81 74 of 4 5.77Up
Larval tubule84 34 of 4 6.00Up
Larval hindgut139 154 of 4 9.93Up
Larval fat body19 63 of 4 1.40None
Larval trachea364 484 of 425.95Up
Larval carcass173 144 of 412.39Up
S2 cells (growing)213 44 of 415.19Up
Whole fly14 24 of 4



Chronologically inappropriate morphogenesis (chinmo):

Annotation Number : CG31666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086758
Gbrowse : chr2L:1653260-1697851 (+) // 99.89 //
Probeset : 1629484_s_at
Accessions : protein= NP_608610; /// NP_722717; /// NP_722718; /// NP_722719;, nucleotide= NM_134766; /// NM_164428; /// NM_164429; /// NM_164430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0086758.
BioGrid reports that CG31666 interacts with CG32016 CG3382 CG3771 .
TRiP has 3 RNAi stocks for FBgn0086758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 44 of 4 7.20Up
Head17 24 of 4 1.10None
Eye55 64 of 4 3.57Up
Thoracicoabdominal ganglion46 24 of 4 3.00Up
Salivary gland12 21 of 4 0.80None
Crop6 20 of 4 0.40Down
Midgut4 10 of 4 0.30Down
Tubule10 11 of 4 0.70Down
Hindgut4 10 of 4 0.30Down
Heart34 34 of 4 2.21Up
Fat body15 64 of 4 0.97None
Ovary3 00 of 4 0.20Down
Testis172 94 of 411.20Up
Male accessory glands9 20 of 4 0.60None
Virgin spermatheca8 01 of 4 0.55Down
Mated spermatheca8 21 of 4 0.54None
Adult carcass2 00 of 4 0.20Down
Larval CNS194 344 of 412.57Up
Larval Salivary gland44 24 of 4 2.87Up
Larval midgut24 14 of 4 1.56Up
Larval tubule30 14 of 4 2.00Up
Larval hindgut52 74 of 4 3.42Up
Larval fat body22 102 of 4 1.50None
Larval trachea313 534 of 420.28Up
Larval carcass56 44 of 4 3.66Up
S2 cells (growing)133 84 of 4 8.60Up
Whole fly15 14 of 4

Looking for FBgn0086758. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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