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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086856 through 18771 annotations produced 1 hits



anon-21Ca (CG11555):

Annotation Number : CG11555
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086856
Gbrowse : chr2L:273954-274766 (+) // 100.0 //
Probeset : 1627337_at
Accessions : protein= NP_608510;, nucleotide= NM_134666;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086856.
BioGrid reports that CG11555 interacts with CG33553 .
TRiP has 1 RNAi stocks for FBgn0086856 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 74 of 4 0.50Down
Head123 ± 54 of 4 0.50Down
Eye125 ± 14 of 4 0.55Down
Thoracicoabdominal ganglion103 ± 44 of 4 0.50Down
Salivary gland163 ± 54 of 4 0.72None
Crop168 ± 74 of 4 0.70None
Midgut112 ± 74 of 4 0.50Down
Tubule86 ± 84 of 4 0.40Down
Hindgut110 ± 54 of 4 0.50Down
Heart172 ± 64 of 4 0.76None
Fat body212 ± 134 of 4 0.93None
Ovary534 ± 34 of 4 2.30Up
Testis53 ± 34 of 4 0.20Down
Male accessory glands283 ± 74 of 4 1.20None
Virgin spermatheca178 ± 84 of 4 0.78None
Mated spermatheca194 ± 84 of 4 0.85None
Adult carcass126 ± 124 of 4 0.60Down
Larval CNS319 ± 224 of 4 1.40Up
Larval Salivary gland213 ± 124 of 4 0.93None
Larval midgut89 ± 84 of 4 0.39Down
Larval tubule93 ± 64 of 4 0.40Down
Larval hindgut160 ± 114 of 4 0.70None
Larval fat body137 ± 134 of 4 0.60Down
Larval trachea239 ± 324 of 4 1.05None
Larval carcass207 ± 284 of 4 0.91None
S2 cells (growing)206 ± 44 of 4 0.90None
Whole fly228 ± 244 of 4

Looking for FBgn0086856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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