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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086895 through 18771 annotations produced 1 hits



peanuts (pea):

Annotation Number : CG8241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086895
Gbrowse : chr2R:10040660-10044611 (+) // 100.0 //
Probeset : 1640151_at
Accessions : protein= NP_610928;, nucleotide= NM_137084;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0086895.
TRiP has 1 RNAi stocks for FBgn0086895 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086895 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 14 of 4 0.70Down
Head47 34 of 4 0.50Down
Eye46 14 of 4 0.46Down
Thoracicoabdominal ganglion70 24 of 4 0.70Down
Salivary gland64 23 of 4 0.63Down
Crop60 24 of 4 0.60Down
Midgut52 24 of 4 0.50Down
Tubule49 44 of 4 0.50Down
Hindgut71 24 of 4 0.70Down
Heart34 24 of 4 0.34Down
Fat body38 44 of 4 0.38Down
Ovary240 44 of 4 2.40Up
Testis20 30 of 4 0.20Down
Male accessory glands44 34 of 4 0.40Down
Virgin spermatheca39 24 of 4 0.39Down
Mated spermatheca46 54 of 4 0.46Down
Adult carcass33 50 of 4 0.30Down
Larval CNS144 104 of 4 1.42Up
Larval Salivary gland129 44 of 4 1.28Up
Larval midgut42 14 of 4 0.41Down
Larval tubule60 34 of 4 0.60Down
Larval hindgut55 34 of 4 0.54Down
Larval fat body40 01 of 4 0.40Down
Larval trachea82 84 of 4 0.81None
Larval carcass69 44 of 4 0.69Down
S2 cells (growing)108 34 of 4 1.06None
Whole fly101 74 of 4

Looking for FBgn0086895. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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