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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086898 through 18771 annotations produced 1 hits



diego (dgo):

Annotation Number : CG12342
Flybase ID : FBgn0086898
Gbrowse : chr2R:6703530-6707378 (-) // 100.0 //
Probeset : 1638064_a_at
Accessions : protein= NP_610614; /// NP_724973;, nucleotide= NM_136770; /// NM_165800;
Pathway : 0005737 // cytoplasm // traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086898.
Homophila reports that CG12342 is a close match (4e-11) to human gene INV;INVS;NPH2;NPHP2 (NP_055240), a gene associated with Nephronophthisis 2, infantile, 602088 (3).
TRiP has 1 RNAi stocks for FBgn0086898 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086898 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.10Down
Head56 44 of 4 1.10None
Eye45 23 of 4 0.87None
Thoracicoabdominal ganglion12 00 of 4 0.20Down
Salivary gland27 51 of 4 0.53Down
Crop155 64 of 4 3.00Up
Midgut5 10 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut91 84 of 4 1.80Up
Heart10 30 of 4 0.21Down
Fat body25 60 of 4 0.49Down
Ovary114 124 of 4 2.20Up
Testis3 10 of 4 0.10Down
Male accessory glands25 40 of 4 0.50Down
Virgin spermatheca22 21 of 4 0.44Down
Mated spermatheca22 50 of 4 0.43Down
Adult carcass42 42 of 4 0.80None
Larval CNS9 30 of 4 0.17Down
Larval Salivary gland12 20 of 4 0.23Down
Larval midgut10 20 of 4 0.19Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut73 44 of 4 1.42Up
Larval fat body19 10 of 4 0.40Down
Larval trachea75 84 of 4 1.45Up
Larval carcass61 22 of 4 1.19None
S2 cells (growing)8 00 of 4 0.17Down
Whole fly51 62 of 4

Looking for FBgn0086898. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime