FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086899 through 18771 annotations produced 3 hits

Tousled-like kinase (tlk):

Annotation Number : CG32782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086899
Gbrowse : chrX:3679165-3682708 (+) // 99.5 //
Probeset : 1629156_at
Accessions : protein= NP_001096873; /// NP_001138152; /// NP_001138153; /// NP_001138154; /// NP_001138155; /// NP_001162655; /// NP_570073; /// NP_996343;, nucleotide= NM_001103403; /// NM_001144680; /// NM_001144681; /// NM_001144682; /// NM_001144683; /// NM_001169184; /// NM_130717; /// NM_206620;
Pathway : embryonic // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay //
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0086899.
Homophila reports that CG32782 is a close match (4e-11) to human gene CAPB;DRT;EPHB2;EPHT3;ERK;PCBC (NP_059145), a gene associated with Prostate cancer, progression and metastasis of, 603688 (3).
TRiP has 4 RNAi stocks for FBgn0086899 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086899 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	172 ± 9	4 of 4	4.00	Up
Head	62 ± 3	4 of 4	1.50	Up
Eye	61 ± 2	4 of 4	1.41	Up
Thoracicoabdominal ganglion	139 ± 3	4 of 4	3.20	Up
Salivary gland	52 ± 7	4 of 4	1.20	None
Crop	95 ± 4	4 of 4	2.20	Up
Midgut	62 ± 3	4 of 4	1.40	Up
Tubule	55 ± 2	4 of 4	1.30	Up
Hindgut	84 ± 4	4 of 4	1.90	Up
Heart	50 ± 2	4 of 4	1.17	Up
Fat body	95 ± 8	4 of 4	2.20	Up
Ovary	79 ± 1	4 of 4	1.80	Up
Testis	16 ± 1	4 of 4	0.40	Down
Male accessory glands	94 ± 6	4 of 4	2.20	Up
Virgin spermatheca	106 ± 10	4 of 4	2.45	Up
Mated spermatheca	119 ± 4	4 of 4	2.76	Up
Adult carcass	49 ± 8	4 of 4	1.20	None
Larval CNS	335 ± 41	4 of 4	7.75	Up
Larval Salivary gland	130 ± 10	4 of 4	3.00	Up
Larval midgut	80 ± 4	4 of 4	1.86	Up
Larval tubule	109 ± 3	4 of 4	2.50	Up
Larval hindgut	107 ± 1	4 of 4	2.47	Up
Larval fat body	78 ± 6	4 of 4	1.80	Up
Larval trachea	98 ± 7	4 of 4	2.27	Up
Larval carcass	99 ± 5	4 of 4	2.30	Up
S2 cells (growing)	237 ± 8	4 of 4	5.48	Up
Whole fly	43 ± 1	4 of 4

Tousled-like kinase (tlk):

Annotation Number : CG12462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086899
Gbrowse : chrX:3641195-3641498 (+) // 100.0 //
Probeset : 1634754_at
Accessions : protein= NP_001096873; /// NP_001138152; /// NP_001138153; /// NP_001138154; /// NP_001138155; /// NP_001162655; /// NP_570073; /// NP_996343;, nucleotide= NM_001103403; /// NM_001144680; /// NM_001144681; /// NM_001144682; /// NM_001144683; /// NM_001169184; /// NM_130717; /// NM_206620;
Pathway : embryonic // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay //
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0086899.
TRiP has 4 RNAi stocks for FBgn0086899 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086899 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	1.10	None
Head	3 ± 0	0 of 4	0.60	None
Eye	11 ± 1	1 of 4	2.22	Up
Thoracicoabdominal ganglion	7 ± 3	0 of 4	1.40	None
Salivary gland	16 ± 6	0 of 4	3.39	None
Crop	9 ± 2	0 of 4	1.80	None
Midgut	7 ± 0	0 of 4	1.50	None
Tubule	10 ± 0	0 of 4	2.00	Up
Hindgut	9 ± 2	0 of 4	1.90	None
Heart	5 ± 2	0 of 4	1.09	None
Fat body	10 ± 3	0 of 4	2.02	None
Ovary	4 ± 2	0 of 4	1.00	None
Testis	9 ± 2	0 of 4	2.00	None
Male accessory glands	13 ± 3	0 of 4	2.70	None
Virgin spermatheca	8 ± 1	0 of 4	1.75	None
Mated spermatheca	7 ± 1	0 of 4	1.51	None
Adult carcass	11 ± 2	0 of 4	2.30	None
Larval CNS	11 ± 2	0 of 4	2.31	Up
Larval Salivary gland	29 ± 3	1 of 4	5.93	Up
Larval midgut	35 ± 5	0 of 4	7.19	Up
Larval tubule	9 ± 1	0 of 4	1.90	None
Larval hindgut	14 ± 1	0 of 4	2.88	Up
Larval fat body	8 ± 3	0 of 4	1.70	None
Larval trachea	10 ± 7	0 of 4	2.13	None
Larval carcass	12 ± 2	0 of 4	2.45	Up
S2 cells (growing)	13 ± 1	0 of 4	2.72	Up
Whole fly	5 ± 1	0 of 4

Tousled-like kinase (tlk):

Annotation Number : CG32781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086899
Gbrowse : chrX:3656509-3657046 (+) // 100.0 //
Probeset : 1633368_at
Accessions : protein= NP_001096873; /// NP_001138152; /// NP_001138153; /// NP_001138154; /// NP_001138155; /// NP_001162655; /// NP_570073; /// NP_996343;, nucleotide= NM_001103403; /// NM_001144680; /// NM_001144681; /// NM_001144682; /// NM_001144683; /// NM_001169184; /// NM_130717; /// NM_206620;
Pathway : embryonic // inferred from mutant phenotype /// 0046777 // protein autophosphorylation // inferred from direct assay //
Interpro : 0005634 // nucleus // inferred from direct assay
FlyMine data for FBgn0086899.
TRiP has 4 RNAi stocks for FBgn0086899 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086899 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	1 of 4	2.50	None
Head	2 ± 1	0 of 4	1.10	None
Eye	1 ± 0	0 of 4	0.94	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.80	None
Salivary gland	2 ± 0	0 of 4	1.15	None
Crop	5 ± 2	1 of 4	2.80	None
Midgut	2 ± 0	0 of 4	1.30	None
Tubule	2 ± 0	0 of 4	1.40	None
Hindgut	2 ± 0	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.85	None
Fat body	4 ± 2	2 of 4	2.54	None
Ovary	0 ± 0	0 of 4	0.40	None
Testis	0 ± 0	0 of 4	0.50	None
Male accessory glands	5 ± 1	1 of 4	3.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.24	None
Mated spermatheca	0 ± 0	0 of 4	0.51	None
Adult carcass	5 ± 3	0 of 4	3.20	None
Larval CNS	5 ± 1	3 of 4	3.26	Up
Larval Salivary gland	1 ± 0	0 of 4	0.97	None
Larval midgut	1 ± 0	0 of 4	0.85	None
Larval tubule	3 ± 1	1 of 4	2.20	None
Larval hindgut	1 ± 0	0 of 4	0.94	None
Larval fat body	0 ± 0	0 of 4	0.40	None
Larval trachea	3 ± 2	1 of 4	1.88	None
Larval carcass	2 ± 1	0 of 4	1.65	None
S2 cells (growing)	5 ± 0	2 of 4	3.32	Up
Whole fly	1 ± 0	0 of 4

Looking for FBgn0086899. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720