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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086901 through 18771 annotations produced 4 hits



crossveinless-c (cv-c):

Annotation Number : CG31319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086901
Gbrowse : chr3R:10217095-10231164 (-) // 100.0 //
Probeset : 1625516_at
Accessions : protein= NP_001097786; /// NP_001097788; /// NP_731907;, nucleotide= NM_001104316; /// NM_001104318; /// NM_169583;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : open tracheal system // inferred from mutant phenotype /// 0035277 // spiracle morphogenesis
FlyMine data for FBgn0086901.
Homophila reports that CG31319 is a close match (3e-125) to human gene DLC1 (NP_872584), a gene associated with Colorectal cancer, somatic (3).
BioGrid reports that CG31319 interacts with CG17934 CG5105 CG5792 CG7399 CG8701 .
VDRC has 10 RNAi stocks for FBgn0086901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 23 of 4 1.30None
Head21 ± 14 of 4 2.00Up
Eye11 ± 04 of 4 1.14None
Thoracicoabdominal ganglion15 ± 14 of 4 1.50None
Salivary gland9 ± 40 of 4 0.87None
Crop31 ± 34 of 4 3.00Up
Midgut30 ± 23 of 4 3.00Up
Tubule24 ± 13 of 4 2.30Up
Hindgut24 ± 34 of 4 2.40Up
Heart18 ± 14 of 4 1.79None
Fat body35 ± 54 of 4 3.36Up
Ovary10 ± 14 of 4 1.00None
Testis13 ± 14 of 4 1.20None
Male accessory glands24 ± 14 of 4 2.30Up
Virgin spermatheca38 ± 34 of 4 3.68Up
Mated spermatheca37 ± 34 of 4 3.57Up
Adult carcass28 ± 33 of 4 2.80Up
Larval CNS15 ± 24 of 4 1.52None
Larval Salivary gland24 ± 73 of 4 2.32None
Larval midgut39 ± 24 of 4 3.81Up
Larval tubule19 ± 24 of 4 1.90None
Larval hindgut22 ± 24 of 4 2.15Up
Larval fat body35 ± 83 of 4 3.40Up
Larval trachea20 ± 34 of 4 1.92Up
Larval carcass40 ± 24 of 4 3.88Up
S2 cells (growing)24 ± 24 of 4 2.37Up
Whole fly10 ± 23 of 4



crossveinless-c (cv-c):

Annotation Number : CG31330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086901
Gbrowse : chr3R:10252686-10258902 (-) // 100.0 //
Probeset : 1624110_at
Accessions : protein= NP_001097786; /// NP_001097788; /// NP_731907;, nucleotide= NM_001104316; /// NM_001104318; /// NM_169583;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : open tracheal system // inferred from mutant phenotype /// 0035277 // spiracle morphogenesis
FlyMine data for FBgn0086901.
VDRC has 10 RNAi stocks for FBgn0086901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.80None
Eye3 ± 10 of 4 2.69None
Thoracicoabdominal ganglion3 ± 10 of 4 2.20None
Salivary gland6 ± 40 of 4 4.17None
Crop3 ± 00 of 4 2.10None
Midgut7 ± 20 of 4 5.10None
Tubule3 ± 00 of 4 2.20Up
Hindgut9 ± 10 of 4 6.20Up
Heart1 ± 00 of 4 0.88None
Fat body6 ± 40 of 4 4.19None
Ovary0 ± 00 of 4 0.60None
Testis1 ± 00 of 4 1.00None
Male accessory glands4 ± 20 of 4 3.40None
Virgin spermatheca5 ± 10 of 4 3.97None
Mated spermatheca2 ± 00 of 4 1.69None
Adult carcass3 ± 10 of 4 2.40None
Larval CNS1 ± 10 of 4 0.84None
Larval Salivary gland6 ± 21 of 4 4.36None
Larval midgut3 ± 10 of 4 2.17None
Larval tubule5 ± 10 of 4 3.70None
Larval hindgut2 ± 00 of 4 1.84None
Larval fat body6 ± 20 of 4 4.20None
Larval trachea3 ± 20 of 4 2.64None
Larval carcass2 ± 10 of 4 1.95None
S2 cells (growing)12 ± 11 of 4 8.28Up
Whole fly1 ± 00 of 4



crossveinless-c (cv-c):

Annotation Number : CG14847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086901
Gbrowse : chr3R:10242122-10243190 (-) // 100.0 //
Probeset : 1638191_at
Accessions : protein= NP_001097786; /// NP_001097788; /// NP_731907;, nucleotide= NM_001104316; /// NM_001104318; /// NM_169583;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : open tracheal system // inferred from mutant phenotype /// 0035277 // spiracle morphogenesis
FlyMine data for FBgn0086901.
VDRC has 10 RNAi stocks for FBgn0086901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.90None
Head3 ± 00 of 4 1.70None
Eye2 ± 00 of 4 1.56None
Thoracicoabdominal ganglion3 ± 10 of 4 1.70None
Salivary gland1 ± 00 of 4 0.82None
Crop4 ± 10 of 4 2.40None
Midgut2 ± 10 of 4 1.50None
Tubule3 ± 10 of 4 2.10None
Hindgut2 ± 00 of 4 1.10None
Heart2 ± 10 of 4 1.37None
Fat body2 ± 10 of 4 1.29None
Ovary1 ± 00 of 4 1.00None
Testis1 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.90None
Virgin spermatheca3 ± 00 of 4 1.74None
Mated spermatheca2 ± 10 of 4 1.56None
Adult carcass8 ± 20 of 4 4.40None
Larval CNS1 ± 00 of 4 0.82None
Larval Salivary gland4 ± 10 of 4 2.63None
Larval midgut5 ± 10 of 4 3.00None
Larval tubule1 ± 00 of 4 0.80None
Larval hindgut2 ± 10 of 4 1.34None
Larval fat body4 ± 10 of 4 2.70None
Larval trachea2 ± 20 of 4 1.63None
Larval carcass1 ± 00 of 4 0.74None
S2 cells (growing)11 ± 13 of 4 6.37Up
Whole fly1 ± 00 of 4



crossveinless-c (cv-c):

Annotation Number : CG14846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086901
Gbrowse : chr3R:10233867-10236128 (-) // 100.0 //
Probeset : 1641545_at
Accessions : protein= NP_001097786; /// NP_001097788; /// NP_731907;, nucleotide= NM_001104316; /// NM_001104318; /// NM_169583;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : open tracheal system // inferred from mutant phenotype /// 0035277 // spiracle morphogenesis
FlyMine data for FBgn0086901.
VDRC has 10 RNAi stocks for FBgn0086901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.70None
Head4 ± 10 of 4 0.80None
Eye3 ± 10 of 4 0.64None
Thoracicoabdominal ganglion5 ± 00 of 4 1.00None
Salivary gland3 ± 10 of 4 0.56None
Crop13 ± 22 of 4 2.40None
Midgut8 ± 20 of 4 1.60None
Tubule2 ± 00 of 4 0.50Down
Hindgut5 ± 10 of 4 1.00None
Heart0 ± 00 of 4 0.14None
Fat body3 ± 10 of 4 0.60None
Ovary3 ± 00 of 4 0.70None
Testis13 ± 14 of 4 2.50Up
Male accessory glands9 ± 10 of 4 1.60None
Virgin spermatheca1 ± 00 of 4 0.23None
Mated spermatheca2 ± 10 of 4 0.46None
Adult carcass6 ± 20 of 4 1.10None
Larval CNS1 ± 20 of 4 0.34None
Larval Salivary gland8 ± 21 of 4 1.58None
Larval midgut2 ± 00 of 4 0.39None
Larval tubule5 ± 20 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.33None
Larval fat body10 ± 21 of 4 1.90None
Larval trachea3 ± 10 of 4 0.72None
Larval carcass4 ± 00 of 4 0.74None
S2 cells (growing)23 ± 24 of 4 4.16Up
Whole fly5 ± 11 of 4

Looking for FBgn0086901. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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