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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086904 through 18771 annotations produced 1 hits



Alpha NAC (Nacalpha):

Annotation Number : CG8759
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086904
Gbrowse : chr2R:8647197-8648377 (-) // 100.0 //
Probeset : 1634390_s_at
Accessions : protein= NP_477216; /// NP_599139; /// NP_725229;, nucleotide= NM_057868; /// NM_134312; /// NM_165950;
Pathway : 0005854 // nascent polypeptide-associated complex // inferred from sequence or structural similarity /// 0005854 // nasc
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086904.
VDRC has 3 RNAi stocks for FBgn0086904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1785 ± 314 of 4 0.70Down
Head2409 ± 774 of 4 0.90Down
Eye2619 ± 554 of 4 0.95None
Thoracicoabdominal ganglion2056 ± 264 of 4 0.70Down
Salivary gland4351 ± 1674 of 4 1.59Up
Crop3539 ± 1254 of 4 1.30Up
Midgut2278 ± 614 of 4 0.80Down
Tubule2757 ± 704 of 4 1.00None
Hindgut2739 ± 374 of 4 1.00None
Heart3259 ± 1484 of 4 1.19Up
Fat body3510 ± 1894 of 4 1.28Up
Ovary3013 ± 664 of 4 1.10Up
Testis880 ± 264 of 4 0.30Down
Male accessory glands4687 ± 2354 of 4 1.70Up
Virgin spermatheca4516 ± 1184 of 4 1.65Up
Mated spermatheca4467 ± 734 of 4 1.63Up
Adult carcass2675 ± 1574 of 4 1.00None
Larval CNS2260 ± 1214 of 4 0.82Down
Larval Salivary gland4216 ± 2234 of 4 1.54Up
Larval midgut1626 ± 384 of 4 0.59Down
Larval tubule2878 ± 584 of 4 1.00None
Larval hindgut2847 ± 494 of 4 1.04None
Larval fat body3271 ± 3024 of 4 1.20None
Larval trachea3742 ± 1084 of 4 1.36Up
Larval carcass3167 ± 1604 of 4 1.15None
S2 cells (growing)3270 ± 534 of 4 1.19Up
Whole fly2744 ± 724 of 4

Looking for FBgn0086904. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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