FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0086906 through 18771 annotations produced 3 hits

sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2040377-2115617 (-) // 60.0 //
Probeset : 1634102_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.00	Down
Head	114 ± 18	4 of 4	1.10	None
Eye	11 ± 2	1 of 4	0.11	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.10	Down
Salivary gland	9 ± 3	0 of 4	0.09	Down
Crop	662 ± 38	4 of 4	6.50	Up
Midgut	41 ± 4	3 of 4	0.40	Down
Tubule	7 ± 0	0 of 4	0.10	Down
Hindgut	310 ± 11	4 of 4	3.00	Up
Heart	134 ± 7	4 of 4	1.31	Up
Fat body	15 ± 6	1 of 4	0.15	Down
Ovary	7 ± 1	0 of 4	0.10	Down
Testis	20 ± 1	3 of 4	0.20	Down
Male accessory glands	42 ± 3	4 of 4	0.40	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	4 ± 1	0 of 4	0.05	Down
Adult carcass	368 ± 41	4 of 4	3.60	Up
Larval CNS	2 ± 1	0 of 4	0.03	Down
Larval Salivary gland	3 ± 1	0 of 4	0.03	Down
Larval midgut	19 ± 2	0 of 4	0.19	Down
Larval tubule	7 ± 1	0 of 4	0.10	Down
Larval hindgut	98 ± 7	4 of 4	0.97	None
Larval fat body	0 ± 0	0 of 4	0.00	Down
Larval trachea	19 ± 10	2 of 4	0.19	Down
Larval carcass	611 ± 18	4 of 4	5.98	Up
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	102 ± 2	4 of 4

sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2090494-2115617 (-) // 100.0 //
Probeset : 1628671_a_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.00	Down
Head	54 ± 8	4 of 4	0.60	Down
Eye	20 ± 4	4 of 4	0.24	Down
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.00	Down
Salivary gland	5 ± 2	0 of 4	0.06	Down
Crop	277 ± 5	4 of 4	3.30	Up
Midgut	31 ± 2	4 of 4	0.40	Down
Tubule	44 ± 4	4 of 4	0.50	Down
Hindgut	137 ± 7	4 of 4	1.60	Up
Heart	211 ± 45	4 of 4	2.52	None
Fat body	6 ± 4	1 of 4	0.08	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	139 ± 3	4 of 4	1.70	Up
Male accessory glands	86 ± 7	4 of 4	1.00	None
Virgin spermatheca	18 ± 2	4 of 4	0.22	Down
Mated spermatheca	38 ± 7	4 of 4	0.45	Down
Adult carcass	322 ± 17	4 of 4	3.80	Up
Larval CNS	4 ± 2	0 of 4	0.06	Down
Larval Salivary gland	17 ± 2	2 of 4	0.21	Down
Larval midgut	43 ± 4	4 of 4	0.52	Down
Larval tubule	23 ± 0	4 of 4	0.30	Down
Larval hindgut	312 ± 19	4 of 4	3.72	Up
Larval fat body	10 ± 8	1 of 4	0.10	Down
Larval trachea	73 ± 15	4 of 4	0.87	None
Larval carcass	642 ± 70	4 of 4	7.66	Up
S2 cells (growing)	2 ± 1	0 of 4	0.03	Down
Whole fly	83 ± 2	4 of 4

sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2090494-2115617 (-) // 100.0 //
Probeset : 1635445_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	3 of 4	0.00	Down
Head	99 ± 7	4 of 4	0.70	None
Eye	18 ± 1	4 of 4	0.13	Down
Thoracicoabdominal ganglion	8 ± 2	1 of 4	0.10	Down
Salivary gland	4 ± 1	0 of 4	0.03	Down
Crop	441 ± 17	4 of 4	3.10	Up
Midgut	75 ± 15	4 of 4	0.50	Down
Tubule	48 ± 6	4 of 4	0.30	Down
Hindgut	185 ± 7	4 of 4	1.30	None
Heart	158 ± 27	4 of 4	1.10	None
Fat body	21 ± 6	3 of 4	0.15	Down
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	184 ± 14	4 of 4	1.30	None
Male accessory glands	204 ± 5	4 of 4	1.40	Up
Virgin spermatheca	29 ± 1	4 of 4	0.21	Down
Mated spermatheca	54 ± 5	4 of 4	0.38	Down
Adult carcass	395 ± 13	4 of 4	2.80	Up
Larval CNS	10 ± 2	4 of 4	0.07	Down
Larval Salivary gland	56 ± 2	4 of 4	0.39	Down
Larval midgut	140 ± 6	4 of 4	0.98	None
Larval tubule	74 ± 3	4 of 4	0.50	Down
Larval hindgut	769 ± 32	4 of 4	5.35	Up
Larval fat body	17 ± 6	2 of 4	0.10	Down
Larval trachea	44 ± 12	4 of 4	0.31	Down
Larval carcass	1370 ± 199	4 of 4	9.54	Up
S2 cells (growing)	7 ± 0	2 of 4	0.05	Down
Whole fly	143 ± 17	4 of 4

Looking for FBgn0086906. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720