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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086906 through 18771 annotations produced 3 hits



sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2090494-2115617 (-) // 100.0 //
Probeset : 1635445_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.00Down
Head99 74 of 4 0.70None
Eye18 14 of 4 0.13Down
Thoracicoabdominal ganglion8 21 of 4 0.10Down
Salivary gland4 10 of 4 0.03Down
Crop441 174 of 4 3.10Up
Midgut75 154 of 4 0.50Down
Tubule48 64 of 4 0.30Down
Hindgut185 74 of 4 1.30None
Heart158 274 of 4 1.10None
Fat body21 63 of 4 0.15Down
Ovary3 10 of 4 0.00Down
Testis184 144 of 4 1.30None
Male accessory glands204 54 of 4 1.40Up
Virgin spermatheca29 14 of 4 0.21Down
Mated spermatheca54 54 of 4 0.38Down
Adult carcass395 134 of 4 2.80Up
Larval CNS10 24 of 4 0.07Down
Larval Salivary gland56 24 of 4 0.39Down
Larval midgut140 64 of 4 0.98None
Larval tubule74 34 of 4 0.50Down
Larval hindgut769 324 of 4 5.35Up
Larval fat body17 62 of 4 0.10Down
Larval trachea44 124 of 4 0.31Down
Larval carcass1370 1994 of 4 9.54Up
S2 cells (growing)7 02 of 4 0.05Down
Whole fly143 174 of 4



sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2090494-2115617 (-) // 100.0 //
Probeset : 1628671_a_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head54 84 of 4 0.60Down
Eye20 44 of 4 0.24Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland5 20 of 4 0.06Down
Crop277 54 of 4 3.30Up
Midgut31 24 of 4 0.40Down
Tubule44 44 of 4 0.50Down
Hindgut137 74 of 4 1.60Up
Heart211 454 of 4 2.52None
Fat body6 41 of 4 0.08Down
Ovary1 00 of 4 0.00Down
Testis139 34 of 4 1.70Up
Male accessory glands86 74 of 4 1.00None
Virgin spermatheca18 24 of 4 0.22Down
Mated spermatheca38 74 of 4 0.45Down
Adult carcass322 174 of 4 3.80Up
Larval CNS4 20 of 4 0.06Down
Larval Salivary gland17 22 of 4 0.21Down
Larval midgut43 44 of 4 0.52Down
Larval tubule23 04 of 4 0.30Down
Larval hindgut312 194 of 4 3.72Up
Larval fat body10 81 of 4 0.10Down
Larval trachea73 154 of 4 0.87None
Larval carcass642 704 of 4 7.66Up
S2 cells (growing)2 10 of 4 0.03Down
Whole fly83 24 of 4



sallimus (sls):

Annotation Number : CG1915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086906
Gbrowse : chr3L:2040377-2115617 (-) // 60.0 //
Probeset : 1634102_at
Accessions : protein= NP_524676; /// NP_652705;, nucleotide= NM_079937; /// NM_144448;
Pathway : 0000794 // condensed nuclear chromosome // inferred from direct assay /// 0005634 // nucleus // inferred from electronic
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from dir
FlyMine data for FBgn0086906.
Homophila reports that CG1915 is a close match (7e-11) to human gene (NP_008995), a gene associated with .
BioGrid reports that CG1915 interacts with CG2189 CG6502 CG32443 CG2189 .
TRiP has 2 RNAi stocks for FBgn0086906 available for purchase.
VDRC has 4 RNAi stocks for FBgn0086906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head114 184 of 4 1.10None
Eye11 21 of 4 0.11Down
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland9 30 of 4 0.09Down
Crop662 384 of 4 6.50Up
Midgut41 43 of 4 0.40Down
Tubule7 00 of 4 0.10Down
Hindgut310 114 of 4 3.00Up
Heart134 74 of 4 1.31Up
Fat body15 61 of 4 0.15Down
Ovary7 10 of 4 0.10Down
Testis20 13 of 4 0.20Down
Male accessory glands42 34 of 4 0.40Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca4 10 of 4 0.05Down
Adult carcass368 414 of 4 3.60Up
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut19 20 of 4 0.19Down
Larval tubule7 10 of 4 0.10Down
Larval hindgut98 74 of 4 0.97None
Larval fat body0 00 of 4 0.00Down
Larval trachea19 102 of 4 0.19Down
Larval carcass611 184 of 4 5.98Up
S2 cells (growing)1 00 of 4 0.01Down
Whole fly102 24 of 4

Looking for FBgn0086906. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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