Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086908 through 18771 annotations produced 2 hits



eggless (egg):

Annotation Number : CG30426
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086908
Gbrowse : chr2R:20663058-20666076 (-) // 100.0 //
Probeset : 1639970_at
Accessions : protein= NP_611966;, nucleotide= NM_138122;
Pathway : epigenetic // inferred from mutant phenotype /// 0044026 // DNA hypermethylation // inferred from mutant phenotype ///
Interpro : epigenetic // inferred from direct assay /// 0048132 // female germ-line stem cell division // inferred from direct ass
FlyMine data for FBgn0086908.
Homophila reports that CG30426 is a close match (4e-19) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
TRiP has 4 RNAi stocks for FBgn0086908 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 14 of 4 1.30None
Head38 24 of 4 0.60Down
Eye53 24 of 4 0.78None
Thoracicoabdominal ganglion78 54 of 4 1.10None
Salivary gland29 40 of 4 0.43Down
Crop38 14 of 4 0.60Down
Midgut35 20 of 4 0.50Down
Tubule63 13 of 4 0.90Down
Hindgut34 40 of 4 0.50Down
Heart29 44 of 4 0.42Down
Fat body26 24 of 4 0.39Down
Ovary124 24 of 4 1.80Up
Testis34 24 of 4 0.50Down
Male accessory glands24 53 of 4 0.40Down
Virgin spermatheca28 14 of 4 0.42Down
Mated spermatheca31 14 of 4 0.46Down
Adult carcass35 24 of 4 0.50Down
Larval CNS160 94 of 4 2.35Up
Larval Salivary gland43 14 of 4 0.63Down
Larval midgut32 10 of 4 0.48Down
Larval tubule41 20 of 4 0.60Down
Larval hindgut41 23 of 4 0.61Down
Larval fat body38 34 of 4 0.60Down
Larval trachea77 64 of 4 1.14None
Larval carcass55 24 of 4 0.82None
S2 cells (growing)97 14 of 4 1.43Up
Whole fly68 74 of 4



eggless (egg):

Annotation Number : CG30422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086908
Gbrowse : chr2R:20666388-20667437 (-) // 100.0 //
Probeset : 1636304_at
Accessions : protein= NP_611966;, nucleotide= NM_138122;
Pathway : epigenetic // inferred from mutant phenotype /// 0044026 // DNA hypermethylation // inferred from mutant phenotype ///
Interpro : epigenetic // inferred from direct assay /// 0048132 // female germ-line stem cell division // inferred from direct ass
FlyMine data for FBgn0086908.
BioGrid reports that CG30422 interacts with CG14464 .
TRiP has 4 RNAi stocks for FBgn0086908 available for purchase.
VDRC has 6 RNAi stocks for FBgn0086908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 24 of 4 1.10None
Head9 22 of 4 0.50Down
Eye6 10 of 4 0.35Down
Thoracicoabdominal ganglion13 12 of 4 0.70None
Salivary gland10 30 of 4 0.57None
Crop18 23 of 4 1.00None
Midgut8 20 of 4 0.50Down
Tubule10 10 of 4 0.50Down
Hindgut12 02 of 4 0.60None
Heart4 12 of 4 0.23Down
Fat body10 22 of 4 0.56Down
Ovary19 14 of 4 1.10None
Testis8 01 of 4 0.40Down
Male accessory glands15 12 of 4 0.80None
Virgin spermatheca8 20 of 4 0.46Down
Mated spermatheca10 21 of 4 0.55None
Adult carcass8 21 of 4 0.40Down
Larval CNS14 34 of 4 0.77None
Larval Salivary gland10 21 of 4 0.55None
Larval midgut3 00 of 4 0.18Down
Larval tubule15 22 of 4 0.80None
Larval hindgut6 10 of 4 0.33Down
Larval fat body18 22 of 4 1.00None
Larval trachea8 12 of 4 0.43Down
Larval carcass10 02 of 4 0.54Down
S2 cells (growing)45 54 of 4 2.41Up
Whole fly18 24 of 4

Looking for FBgn0086908. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime