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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086909 through 18771 annotations produced 1 hits



constitutive transcript (CG31751):

Annotation Number : CG31751
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086909
Gbrowse : chr2L:18677202-18683717 (+) // 100.0 //
Probeset : 1634738_s_at
Accessions : protein= NP_609894; /// NP_724122;, nucleotide= NM_136050; /// NM_165260;
FlyMine data for FBgn0086909.
TRiP has 1 RNAi stocks for FBgn0086909 available for purchase.
VDRC has 3 RNAi stocks for FBgn0086909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain430 224 of 4 3.90Up
Head250 124 of 4 2.20Up
Eye162 144 of 4 1.46Up
Thoracicoabdominal ganglion313 44 of 4 2.80Up
Salivary gland1391 664 of 412.46Up
Crop102 74 of 4 0.90None
Midgut226 184 of 4 2.00Up
Tubule1236 1024 of 411.10Up
Hindgut541 124 of 4 4.90Up
Heart53 34 of 4 0.48Down
Fat body115 154 of 4 1.03None
Ovary62 14 of 4 0.60Down
Testis77 44 of 4 0.70Down
Male accessory glands406 124 of 4 3.60Up
Virgin spermatheca456 424 of 4 4.09Up
Mated spermatheca368 94 of 4 3.30Up
Adult carcass80 54 of 4 0.70Down
Larval CNS146 114 of 4 1.31Up
Larval Salivary gland608 204 of 4 5.45Up
Larval midgut264 314 of 4 2.37Up
Larval tubule2630 1154 of 423.60Up
Larval hindgut1540 1554 of 413.80Up
Larval fat body347 264 of 4 3.10Up
Larval trachea204 144 of 4 1.83Up
Larval carcass231 124 of 4 2.07Up
S2 cells (growing)72 04 of 4 0.65Down
Whole fly111 64 of 4

Looking for FBgn0086909. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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