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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086912 through 18771 annotations produced 1 hits



mushroom body miniature (mbm):

Annotation Number : CG11604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086912
Gbrowse : chr2L:271900-274096 (-) // 100.0 //
Probeset : 1623926_at
Accessions : protein= NP_608511;, nucleotide= NM_134667;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0086912.
BioGrid reports that CG11604 interacts with CG14359 CG32684 .
VDRC has 1 RNAi stocks for FBgn0086912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 24 of 4 0.10Down
Head40 24 of 4 0.20Down
Eye28 14 of 4 0.13Down
Thoracicoabdominal ganglion32 04 of 4 0.20Down
Salivary gland74 34 of 4 0.36Down
Crop46 34 of 4 0.20Down
Midgut58 24 of 4 0.30Down
Tubule39 74 of 4 0.20Down
Hindgut34 14 of 4 0.20Down
Heart32 24 of 4 0.15Down
Fat body86 124 of 4 0.42Down
Ovary449 64 of 4 2.10Up
Testis31 04 of 4 0.10Down
Male accessory glands153 74 of 4 0.70Down
Virgin spermatheca64 34 of 4 0.31Down
Mated spermatheca89 74 of 4 0.43Down
Adult carcass60 84 of 4 0.30Down
Larval CNS174 124 of 4 0.84Down
Larval Salivary gland108 54 of 4 0.52Down
Larval midgut61 64 of 4 0.30Down
Larval tubule25 04 of 4 0.10Down
Larval hindgut62 94 of 4 0.30Down
Larval fat body20 23 of 4 0.10Down
Larval trachea139 134 of 4 0.66Down
Larval carcass112 294 of 4 0.54Down
S2 cells (growing)189 24 of 4 0.91None
Whole fly209 104 of 4

Looking for FBgn0086912. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime