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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086913 through 18771 annotations produced 2 hits



Rab26 (Rab26):

Annotation Number : CG7605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086913
Gbrowse : chr3L:21311873-21327110 (+) // 100.0 //
Probeset : 1623233_at
Accessions : protein= NP_001097658; /// NP_001163488; /// NP_649303;, nucleotide= NM_001104188; /// NM_001170017; /// NM_141046;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0086913.
Homophila reports that CG7605 is a close match (5e-11) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
BioGrid reports that CG7605 interacts with CG7626 CG9572 .
TRiP has 1 RNAi stocks for FBgn0086913 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 44 of 424.40Up
Head15 23 of 4 4.30Up
Eye8 11 of 4 2.46None
Thoracicoabdominal ganglion42 64 of 411.80Up
Salivary gland4 10 of 4 1.21None
Crop2 00 of 4 0.50None
Midgut7 10 of 4 2.10None
Tubule3 00 of 4 1.00None
Hindgut0 00 of 4 0.20None
Heart4 00 of 4 1.26None
Fat body8 00 of 4 2.26None
Ovary0 00 of 4 0.20None
Testis3 10 of 4 1.00None
Male accessory glands4 20 of 4 1.20None
Virgin spermatheca5 10 of 4 1.44None
Mated spermatheca2 00 of 4 0.56None
Adult carcass12 40 of 4 3.40None
Larval CNS16 34 of 4 4.49Up
Larval Salivary gland3 10 of 4 0.89None
Larval midgut7 20 of 4 2.01None
Larval tubule2 10 of 4 0.80None
Larval hindgut2 00 of 4 0.78None
Larval fat body2 00 of 4 0.70None
Larval trachea5 10 of 4 1.39None
Larval carcass1 00 of 4 0.33None
S2 cells (growing)7 11 of 4 2.11None
Whole fly3 10 of 4



Rab26 (Rab26):

Annotation Number : CG32439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086913
Gbrowse : chr3L:21320727-21321399 (+) // 100.0 //
Probeset : 1638744_at
Accessions : protein= NP_001097658; /// NP_001163488; /// NP_649303;, nucleotide= NM_001104188; /// NM_001170017; /// NM_141046;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0086913.
TRiP has 1 RNAi stocks for FBgn0086913 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 434.80Up
Head3 00 of 4 5.40None
Eye1 10 of 4 3.18None
Thoracicoabdominal ganglion4 00 of 4 7.20Up
Salivary gland4 10 of 4 7.36None
Crop1 00 of 4 2.70None
Midgut3 10 of 4 6.50None
Tubule1 00 of 4 2.80Up
Hindgut0 00 of 4 1.00None
Heart1 00 of 4 3.27None
Fat body5 00 of 4 9.00Up
Ovary1 00 of 4 2.90None
Testis0 00 of 4 1.00None
Male accessory glands4 20 of 4 8.60None
Virgin spermatheca2 00 of 4 3.73None
Mated spermatheca1 00 of 4 2.14None
Adult carcass3 10 of 4 6.20None
Larval CNS5 20 of 4 9.45Up
Larval Salivary gland1 00 of 4 2.23None
Larval midgut9 00 of 416.36Up
Larval tubule2 00 of 4 3.70None
Larval hindgut0 00 of 4 1.59None
Larval fat body1 00 of 4 2.70None
Larval trachea1 10 of 4 2.50None
Larval carcass0 00 of 4 1.77None
S2 cells (growing)1 00 of 4 2.23None
Whole fly0 00 of 4

Looking for FBgn0086913. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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