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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0086915 through 18771 annotations produced 1 hits



Male-specific transcript 77F (Mst77F):

Annotation Number : CG3354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086915
Gbrowse : chr3L:20810000-20811150 (-) // 100.0 //
Probeset : 1628256_at
Accessions : protein= NP_524188;, nucleotide= NM_079464;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0019861 // flagellum // inferred from direct assay
FlyMine data for FBgn0086915.
TRiP has 2 RNAi stocks for FBgn0086915 available for purchase.
VDRC has 1 RNAi stocks for FBgn0086915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 12 of 4 0.00Down
Head10 ± 11 of 4 0.00Down
Eye5 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.00Down
Crop9 ± 20 of 4 0.00Down
Midgut4 ± 20 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut6 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.00Down
Fat body8 ± 30 of 4 0.01Down
Ovary3 ± 10 of 4 0.00Down
Testis3857 ± 1584 of 4 4.40Up
Male accessory glands10 ± 40 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca4 ± 20 of 4 0.01Down
Adult carcass34 ± 82 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland6 ± 20 of 4 0.01Down
Larval midgut10 ± 20 of 4 0.01Down
Larval tubule13 ± 11 of 4 0.00Down
Larval hindgut5 ± 00 of 4 0.01Down
Larval fat body1191 ± 5324 of 4 1.40None
Larval trachea39 ± 612 of 4 0.05Down
Larval carcass20 ± 21 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly880 ± 524 of 4

Looking for FBgn0086915. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime