Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0087005 through 18771 annotations produced 2 hits



CG10233 (rtp):

Annotation Number : CG10233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087005
Gbrowse : chr3R:1061811-1063038 (-) // 100.0 //
Probeset : 1640201_at
Accessions : protein= NP_649520; /// NP_730899;, nucleotide= NM_141263; /// NM_169032;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0087005.
BioGrid reports that CG10233 interacts with CG4717 CG8980 CG15422 CG17377 CG18619 CG7570 .
VDRC has 2 RNAi stocks for FBgn0087005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 34 of 4 0.40Down
Head2323 1044 of 412.40Up
Eye7833 724 of 441.90Up
Thoracicoabdominal ganglion14 23 of 4 0.10Down
Salivary gland8 30 of 4 0.04Down
Crop5 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule5 00 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart12 31 of 4 0.07Down
Fat body8 20 of 4 0.05Down
Ovary4 10 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands27 23 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.03Down
Mated spermatheca4 00 of 4 0.02Down
Adult carcass6 30 of 4 0.00Down
Larval CNS4 20 of 4 0.02Down
Larval Salivary gland4 10 of 4 0.02Down
Larval midgut8 30 of 4 0.05Down
Larval tubule9 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.02Down
Larval fat body9 10 of 4 0.10Down
Larval trachea158 3012 of 4 0.85None
Larval carcass6 20 of 4 0.04Down
S2 cells (growing)6 00 of 4 0.03Down
Whole fly187 164 of 4



CG10233 (rtp):

Annotation Number : CG10233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087005
Gbrowse : chr3R:1062471-1063038 (-) // 100.0 //
Probeset : 1635338_a_at
Accessions : protein= NP_649520; /// NP_730899;, nucleotide= NM_141263; /// NM_169032;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0087005.
BioGrid reports that CG10233 interacts with CG4717 CG8980 CG15422 CG17377 CG18619 CG7570 .
VDRC has 2 RNAi stocks for FBgn0087005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 44 of 4 0.50Down
Head1678 1044 of 416.70Up
Eye6416 1014 of 463.89Up
Thoracicoabdominal ganglion15 32 of 4 0.20Down
Salivary gland27 71 of 4 0.28Down
Crop12 40 of 4 0.10Down
Midgut19 21 of 4 0.20Down
Tubule15 10 of 4 0.20Down
Hindgut19 13 of 4 0.20Down
Heart12 22 of 4 0.12Down
Fat body23 41 of 4 0.23Down
Ovary10 11 of 4 0.10Down
Testis11 11 of 4 0.10Down
Male accessory glands33 41 of 4 0.30Down
Virgin spermatheca17 23 of 4 0.17Down
Mated spermatheca16 11 of 4 0.17Down
Adult carcass19 21 of 4 0.20Down
Larval CNS13 33 of 4 0.14Down
Larval Salivary gland17 01 of 4 0.17Down
Larval midgut22 21 of 4 0.22Down
Larval tubule10 30 of 4 0.10Down
Larval hindgut11 20 of 4 0.12Down
Larval fat body17 30 of 4 0.20Down
Larval trachea94 1781 of 4 0.94None
Larval carcass20 20 of 4 0.20Down
S2 cells (growing)20 10 of 4 0.20Down
Whole fly100 114 of 4

Looking for FBgn0087005. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime