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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0087008 through 18771 annotations produced 1 hits



Supporter of Activation of Yellow Protein (e(y)3):

Annotation Number : CG12238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087008
Gbrowse : chrX:19521991-19532385 (-) // 99.86 //
Probeset : 1625117_at
Accessions : protein= NP_608334;, nucleotide= NM_134490;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0045893 // positive regulation of transcription
Interpro : DNA-dependent // inferred from mutant phenotype /// 0048477 // oogenesis // inferred from mutant phenotype"
FlyMine data for FBgn0087008.
TRiP has 1 RNAi stocks for FBgn0087008 available for purchase.
VDRC has 3 RNAi stocks for FBgn0087008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain99 34 of 4 1.50Up
Head41 33 of 4 0.60Down
Eye125 44 of 4 1.93Up
Thoracicoabdominal ganglion74 34 of 4 1.10None
Salivary gland43 50 of 4 0.66None
Crop32 33 of 4 0.50Down
Midgut36 10 of 4 0.60Down
Tubule91 24 of 4 1.40Up
Hindgut39 14 of 4 0.60Down
Heart66 24 of 4 1.02None
Fat body28 91 of 4 0.43Down
Ovary158 104 of 4 2.40Up
Testis26 24 of 4 0.40Down
Male accessory glands39 44 of 4 0.60Down
Virgin spermatheca81 33 of 4 1.24None
Mated spermatheca84 83 of 4 1.30None
Adult carcass35 32 of 4 0.50Down
Larval CNS105 54 of 4 1.61Up
Larval Salivary gland56 82 of 4 0.87None
Larval midgut50 74 of 4 0.77None
Larval tubule38 24 of 4 0.60Down
Larval hindgut50 54 of 4 0.77None
Larval fat body38 54 of 4 0.60Down
Larval trachea170 114 of 4 2.60Up
Larval carcass59 64 of 4 0.90None
S2 cells (growing)71 24 of 4 1.10None
Whole fly65 74 of 4

Looking for FBgn0087008. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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