FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0087012 through 18771 annotations produced 1 hits

Serotonin receptor 2 (5-HT2):

Annotation Number : CG1056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087012
Gbrowse : chr3R:438596-459031 (+) // 100.0 //
Probeset : 1633198_a_at
Accessions : protein= NP_001097684; /// NP_001163505; /// NP_001163506; /// NP_524223; /// NP_730859;, nucleotide= NM_001104214; /// NM_001170034; /// NM_001170035; /// NM_079499; /// NM_169011;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0001587 // 5-HT2 receptor activity // non-traceable author statement /// 0004872 // receptor activity // inferred from e
FlyMine data for FBgn0087012.
Homophila reports that CG1056 is a close match (5e-11) to human gene (NP_000721), a gene associated with .
BioGrid reports that CG1056 interacts with CG11711 .
TRiP has 1 RNAi stocks for FBgn0087012 available for purchase.
VDRC has 1 RNAi stocks for FBgn0087012 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	93 ± 4	4 of 4	5.30	Up
Head	156 ± 17	4 of 4	9.00	Up
Eye	587 ± 28	4 of 4	33.67	Up
Thoracicoabdominal ganglion	31 ± 1	4 of 4	1.80	Up
Salivary gland	1659 ± 68	4 of 4	95.10	Up
Crop	29 ± 2	4 of 4	1.70	Up
Midgut	9 ± 1	1 of 4	0.50	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	14 ± 1	4 of 4	0.80	None
Heart	15 ± 1	4 of 4	0.88	None
Fat body	7 ± 1	0 of 4	0.42	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	33 ± 3	4 of 4	1.90	Up
Male accessory glands	103 ± 2	4 of 4	5.90	Up
Virgin spermatheca	7 ± 2	1 of 4	0.40	Down
Mated spermatheca	6 ± 1	0 of 4	0.39	Down
Adult carcass	13 ± 1	1 of 4	0.80	None
Larval CNS	13 ± 1	4 of 4	0.74	Down
Larval Salivary gland	25 ± 2	4 of 4	1.46	Up
Larval midgut	9 ± 2	0 of 4	0.52	Down
Larval tubule	2 ± 1	0 of 4	0.20	Down
Larval hindgut	6 ± 0	2 of 4	0.34	Down
Larval fat body	9 ± 1	0 of 4	0.60	Down
Larval trachea	10 ± 15	1 of 4	0.58	None
Larval carcass	3 ± 1	0 of 4	0.18	Down
S2 cells (growing)	0 ± 0	0 of 4	0.03	Down
Whole fly	17 ± 0	3 of 4

Looking for FBgn0087012. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720