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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0087035 through 18771 annotations produced 2 hits



argonaute 2 /// (AGO2 /// CG7739):

Annotation Number : CG7739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036509
Gbrowse : chr3L:15553832-15556163 (-) // 100.0 //
Probeset : 1637601_at
Accessions : protein= NP_648776;, nucleotide= NM_140519;
FlyMine data for FBgn0036509.
BDGP gene expression has embryonic in situ data for CG7739: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain640 134 of 4 3.40Up
Head450 144 of 4 2.40Up
Eye603 224 of 4 3.23Up
Thoracicoabdominal ganglion641 284 of 4 3.40Up
Salivary gland642 124 of 4 3.44Up
Crop309 104 of 4 1.70Up
Midgut340 94 of 4 1.80Up
Tubule270 14 of 4 1.50Up
Hindgut352 64 of 4 1.90Up
Heart348 44 of 4 1.87Up
Fat body320 154 of 4 1.72Up
Ovary159 44 of 4 0.90Down
Testis168 24 of 4 0.90Down
Male accessory glands549 304 of 4 2.90Up
Virgin spermatheca329 174 of 4 1.76Up
Mated spermatheca311 84 of 4 1.67Up
Adult carcass294 104 of 4 1.60Up
Larval CNS346 204 of 4 1.86Up
Larval Salivary gland346 214 of 4 1.86Up
Larval midgut404 224 of 4 2.17Up
Larval tubule635 204 of 4 3.40Up
Larval hindgut349 94 of 4 1.87Up
Larval fat body358 154 of 4 1.90Up
Larval trachea228 274 of 4 1.23None
Larval carcass225 244 of 4 1.21None
S2 cells (growing)596 24 of 4 3.20Up
Whole fly186 44 of 4



argonaute 2 (AGO2):

Annotation Number : CG7439
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087035
Gbrowse : chr3L:15547216-15554142 (+) // 99.9 //
Probeset : 1636068_a_at
Accessions : protein= NP_648775; /// NP_730054;, nucleotide= NM_140518; /// NM_168626;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0016442 // RNA-induced silencing complex // inferred from direct
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0087035.
BioGrid reports that CG7439 interacts with CG9302 CG6203 CG4170 CG7439 CG4792 CG6203 .
TRiP has 1 RNAi stocks for FBgn0087035 available for purchase.
VDRC has 3 RNAi stocks for FBgn0087035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain622 64 of 4 1.40Up
Head671 204 of 4 1.50Up
Eye628 74 of 4 1.39Up
Thoracicoabdominal ganglion548 274 of 4 1.20None
Salivary gland1173 134 of 4 2.59Up
Crop1009 114 of 4 2.20Up
Midgut759 204 of 4 1.70Up
Tubule1067 474 of 4 2.40Up
Hindgut818 114 of 4 1.80Up
Heart876 374 of 4 1.93Up
Fat body951 814 of 4 2.10Up
Ovary447 184 of 4 1.00None
Testis272 54 of 4 0.60Down
Male accessory glands864 404 of 4 1.90Up
Virgin spermatheca771 214 of 4 1.70Up
Mated spermatheca790 294 of 4 1.74Up
Adult carcass760 384 of 4 1.70Up
Larval CNS764 414 of 4 1.69Up
Larval Salivary gland1804 464 of 4 3.98Up
Larval midgut744 194 of 4 1.64Up
Larval tubule966 164 of 4 2.10Up
Larval hindgut821 644 of 4 1.81Up
Larval fat body971 604 of 4 2.10Up
Larval trachea1379 274 of 4 3.05Up
Larval carcass979 504 of 4 2.16Up
S2 cells (growing)1674 514 of 4 3.70Up
Whole fly453 294 of 4

Looking for FBgn0087035. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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