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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0087040 through 18771 annotations produced 1 hits



alpha-tubulin (alphaTub67C):

Annotation Number : CG8308
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0087040
Gbrowse : chr3L:9674378-9676472 (+) // 100.0 //
Probeset : 1630239_at
Accessions : protein= NP_524009;, nucleotide= NM_079285;
Pathway : 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0087040.
Homophila reports that CG8308 is a close match (0) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG8308 interacts with CG7831 CG1763 .
TRiP has 1 RNAi stocks for FBgn0087040 available for purchase.
VDRC has 3 RNAi stocks for FBgn0087040 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.00Down
Head6 ± 11 of 4 0.00Down
Eye5 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion15 ± 24 of 4 0.00Down
Salivary gland15 ± 41 of 4 0.01Down
Crop6 ± 12 of 4 0.00Down
Midgut11 ± 30 of 4 0.00Down
Tubule34 ± 271 of 4 0.00Down
Hindgut4 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.00Down
Fat body21 ± 123 of 4 0.02Down
Ovary2182 ± 204 of 4 1.70Up
Testis7 ± 21 of 4 0.00Down
Male accessory glands8 ± 31 of 4 0.00Down
Virgin spermatheca20 ± 23 of 4 0.02Down
Mated spermatheca12 ± 41 of 4 0.01Down
Adult carcass50 ± 243 of 4 0.00Down
Larval CNS7 ± 31 of 4 0.01Down
Larval Salivary gland6 ± 30 of 4 0.01Down
Larval midgut20 ± 10 of 4 0.02Down
Larval tubule5 ± 12 of 4 0.00Down
Larval hindgut9 ± 04 of 4 0.01Down
Larval fat body11 ± 22 of 4 0.00Down
Larval trachea6 ± 30 of 4 0.01Down
Larval carcass11 ± 12 of 4 0.01Down
S2 cells (growing)13 ± 24 of 4 0.01Down
Whole fly1283 ± 464 of 4

Looking for FBgn0087040. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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