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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0243486 through 18771 annotations produced 2 hits



reduced ocelli (rdo):

Annotation Number : HDC03016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243486
Gbrowse : chr2L:18025372-18030201 (+) // 100.0 //
Probeset : 1629025_at
Accessions : protein= NP_609861;, nucleotide= NM_136017;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0243486.
VDRC has 1 RNAi stocks for FBgn0243486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 1.60None
Head2 ± 00 of 4 0.80None
Eye6 ± 20 of 4 2.28None
Thoracicoabdominal ganglion6 ± 10 of 4 2.10None
Salivary gland8 ± 60 of 4 3.03None
Crop6 ± 10 of 4 2.20None
Midgut7 ± 10 of 4 2.60None
Tubule5 ± 10 of 4 2.00Up
Hindgut3 ± 00 of 4 1.00None
Heart3 ± 10 of 4 1.09None
Fat body6 ± 50 of 4 2.25None
Ovary2 ± 00 of 4 1.00None
Testis5 ± 00 of 4 2.00None
Male accessory glands5 ± 10 of 4 2.00None
Virgin spermatheca8 ± 10 of 4 2.97Up
Mated spermatheca6 ± 30 of 4 2.05None
Adult carcass7 ± 20 of 4 2.40None
Larval CNS3 ± 10 of 4 1.35None
Larval Salivary gland1 ± 00 of 4 0.57None
Larval midgut5 ± 30 of 4 2.00None
Larval tubule6 ± 10 of 4 2.20None
Larval hindgut2 ± 00 of 4 0.79None
Larval fat body5 ± 20 of 4 1.80None
Larval trachea5 ± 40 of 4 1.84None
Larval carcass13 ± 10 of 4 4.72Up
S2 cells (growing)6 ± 10 of 4 2.28None
Whole fly2 ± 10 of 4



reduced ocelli (rdo):

Annotation Number : CG15151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243486
Gbrowse : chr2L:18051460-18070246 (+) // 100.0 //
Probeset : 1637869_at
Accessions : protein= NP_609861;, nucleotide= NM_136017;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0243486.
Homophila reports that CG15151 is a close match (2e-11) to human gene (NP_003256), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0243486 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 ± 154 of 424.60Up
Head117 ± 144 of 4 8.90Up
Eye244 ± 224 of 418.37Up
Thoracicoabdominal ganglion203 ± 74 of 415.30Up
Salivary gland4 ± 31 of 4 0.35None
Crop1 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body3 ± 30 of 4 0.24Down
Ovary0 ± 00 of 4 0.10Down
Testis36 ± 34 of 4 2.80Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.11Down
Mated spermatheca2 ± 00 of 4 0.18Down
Adult carcass10 ± 40 of 4 0.80None
Larval CNS131 ± 124 of 4 9.91Up
Larval Salivary gland3 ± 00 of 4 0.22Down
Larval midgut5 ± 10 of 4 0.42Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut4 ± 12 of 4 0.36Down
Larval fat body19 ± 24 of 4 1.50None
Larval trachea10 ± 44 of 4 0.80None
Larval carcass19 ± 44 of 4 1.46None
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly13 ± 13 of 4

Looking for FBgn0243486. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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