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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0243514 through 18771 annotations produced 1 hits



eater (eater):

Annotation Number : CG6124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243514
Gbrowse : chr3R:22921645-22925401 (-) // 100.0 // /// chr3R:22922833-22924031 (-) // 39.27 //
Probeset : 1627746_at
Accessions : protein= NP_651533;, nucleotide= NM_143276;
Pathway : recognition // inferred from mutant phenotype"
FlyMine data for FBgn0243514.
Homophila reports that CG6124 is a close match (1e-11) to human gene FRAS1 (NP_079350), a gene associated with Fraser syndrome, 219000 (3).
TRiP has 1 RNAi stocks for FBgn0243514 available for purchase.
VDRC has 2 RNAi stocks for FBgn0243514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 02 of 4 1.20None
Head55 ± 34 of 4 3.30Up
Eye13 ± 32 of 4 0.83None
Thoracicoabdominal ganglion12 ± 21 of 4 0.80None
Salivary gland11 ± 50 of 4 0.67None
Crop5 ± 10 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.30Down
Hindgut0 ± 00 of 4 0.00Down
Heart362 ± 314 of 421.86Up
Fat body18 ± 41 of 4 1.08None
Ovary0 ± 00 of 4 0.10Down
Testis9 ± 01 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca14 ± 10 of 4 0.85None
Mated spermatheca11 ± 20 of 4 0.67None
Adult carcass78 ± 54 of 4 4.70Up
Larval CNS1 ± 20 of 4 0.11Down
Larval Salivary gland1 ± 00 of 4 0.11Down
Larval midgut3 ± 10 of 4 0.21Down
Larval tubule44 ± 104 of 4 2.70None
Larval hindgut22 ± 23 of 4 1.34None
Larval fat body59 ± 134 of 4 3.60None
Larval trachea58 ± 74 of 4 3.53Up
Larval carcass154 ± 134 of 4 9.28Up
S2 cells (growing)288 ± 124 of 417.35Up
Whole fly16 ± 21 of 4

Looking for FBgn0243514. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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