FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0250746 through 18771 annotations produced 1 hits

beta-type 4 subunit (Prosbeta7):

Annotation Number : CG12000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250746
Gbrowse : chr3R:1182733-1184086 (-) // 100.0 //
Probeset : 1630851_s_at
Accessions : protein= NP_649529; /// NP_730922;, nucleotide= NM_141272; /// NM_169049;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author stat
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0250746.
BioGrid reports that CG12000 interacts with CG13840 CG15352 CG5009 .
TRiP has 1 RNAi stocks for FBgn0250746 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250746 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	344 ± 9	4 of 4	0.30	Down
Head	663 ± 9	4 of 4	0.70	Down
Eye	851 ± 15	4 of 4	0.84	Down
Thoracicoabdominal ganglion	450 ± 16	4 of 4	0.40	Down
Salivary gland	570 ± 24	4 of 4	0.56	Down
Crop	978 ± 24	4 of 4	1.00	None
Midgut	988 ± 22	4 of 4	1.00	None
Tubule	905 ± 59	4 of 4	0.90	None
Hindgut	744 ± 12	4 of 4	0.70	Down
Heart	3774 ± 250	4 of 4	3.71	Up
Fat body	2352 ± 152	4 of 4	2.31	Up
Ovary	1136 ± 2	4 of 4	1.10	Up
Testis	977 ± 24	4 of 4	1.00	None
Male accessory glands	923 ± 55	4 of 4	0.90	None
Virgin spermatheca	844 ± 15	4 of 4	0.83	Down
Mated spermatheca	797 ± 65	4 of 4	0.78	Down
Adult carcass	1950 ± 23	4 of 4	1.90	Up
Larval CNS	1054 ± 65	4 of 4	1.04	None
Larval Salivary gland	1528 ± 101	4 of 4	1.50	Up
Larval midgut	1491 ± 136	4 of 4	1.47	Up
Larval tubule	2464 ± 54	4 of 4	2.40	Up
Larval hindgut	1296 ± 88	4 of 4	1.28	Up
Larval fat body	1363 ± 98	4 of 4	1.30	Up
Larval trachea	1380 ± 171	4 of 4	1.36	Up
Larval carcass	2264 ± 185	4 of 4	2.23	Up
S2 cells (growing)	1066 ± 16	4 of 4	1.05	None
Whole fly	1016 ± 22	4 of 4

Looking for FBgn0250746. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720