FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0250753 through 18771 annotations produced 2 hits

krasavietz (exba):

Annotation Number : CG2922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250753
Gbrowse : chr3R:1421594-1426891 (-) // 100.0 //
Probeset : 1626449_s_at
Accessions : protein= NP_524238; /// NP_648654; /// NP_729907; /// NP_729908; /// NP_729909; /// NP_730958; /// NP_730959; /// NP_730960; /// NP_730961; /// NP_730962; /// NP_730963;, nucleotide= NM_079514; /// NM_140397; /// NM_168548; /// NM_168549; /// NM_168550; /// NM_169074; /// NM_169075; /// NM_169076; /// NM_169077; /// NM_169078; /// NM_169079;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043025 // neur
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0250753.
BioGrid reports that CG2922 interacts with CG8191 CG3335 CG3880 CG3340 .
TRiP has 2 RNAi stocks for FBgn0250753 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250753 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1347 ± 32	4 of 4	0.80	None
Head	1426 ± 19	4 of 4	0.90	None
Eye	2314 ± 58	4 of 4	1.45	Up
Thoracicoabdominal ganglion	1196 ± 17	4 of 4	0.70	Down
Salivary gland	1769 ± 50	4 of 4	1.10	None
Crop	2059 ± 73	4 of 4	1.30	Up
Midgut	908 ± 11	4 of 4	0.60	Down
Tubule	1514 ± 42	4 of 4	0.90	Down
Hindgut	1796 ± 17	4 of 4	1.10	None
Heart	1812 ± 87	4 of 4	1.13	None
Fat body	1632 ± 150	4 of 4	1.02	None
Ovary	1890 ± 36	4 of 4	1.20	Up
Testis	1563 ± 45	4 of 4	1.00	None
Male accessory glands	1819 ± 53	4 of 4	1.10	None
Virgin spermatheca	1226 ± 44	4 of 4	0.77	Down
Mated spermatheca	1534 ± 46	4 of 4	0.96	None
Adult carcass	1462 ± 53	4 of 4	0.90	None
Larval CNS	1563 ± 37	4 of 4	0.98	None
Larval Salivary gland	2267 ± 54	4 of 4	1.42	Up
Larval midgut	1086 ± 52	4 of 4	0.68	Down
Larval tubule	2248 ± 66	4 of 4	1.40	Up
Larval hindgut	1764 ± 44	4 of 4	1.10	None
Larval fat body	1268 ± 60	4 of 4	0.80	Down
Larval trachea	2090 ± 240	4 of 4	1.31	Up
Larval carcass	2375 ± 145	4 of 4	1.48	Up
S2 cells (growing)	1895 ± 16	4 of 4	1.18	Up
Whole fly	1601 ± 92	4 of 4

krasavietz (exba):

Annotation Number : CG2922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250753
Gbrowse : chr3R:1421085-1426891 (-) // 100.0 //
Probeset : 1625197_at
Accessions : protein= NP_524238; /// NP_730958; /// NP_730959; /// NP_730960; /// NP_730961; /// NP_730962; /// NP_730963;, nucleotide= NM_079514; /// NM_169074; /// NM_169075; /// NM_169076; /// NM_169077; /// NM_169078; /// NM_169079;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // inferred from direct assay /// 0043025 // neur
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0250753.
BioGrid reports that CG2922 interacts with CG8191 CG3335 CG3880 CG3340 .
TRiP has 2 RNAi stocks for FBgn0250753 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250753 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	458 ± 8	4 of 4	1.60	Up
Head	337 ± 29	4 of 4	1.10	None
Eye	810 ± 62	4 of 4	2.74	Up
Thoracicoabdominal ganglion	379 ± 19	4 of 4	1.30	Up
Salivary gland	155 ± 6	4 of 4	0.53	Down
Crop	262 ± 11	4 of 4	0.90	None
Midgut	148 ± 6	4 of 4	0.50	Down
Tubule	291 ± 14	4 of 4	1.00	None
Hindgut	238 ± 2	4 of 4	0.80	Down
Heart	306 ± 23	4 of 4	1.04	None
Fat body	306 ± 35	4 of 4	1.04	None
Ovary	493 ± 9	4 of 4	1.70	Up
Testis	508 ± 10	4 of 4	1.70	Up
Male accessory glands	209 ± 11	4 of 4	0.70	Down
Virgin spermatheca	489 ± 25	4 of 4	1.66	Up
Mated spermatheca	501 ± 11	4 of 4	1.70	Up
Adult carcass	175 ± 22	4 of 4	0.60	Down
Larval CNS	922 ± 30	4 of 4	3.12	Up
Larval Salivary gland	315 ± 11	4 of 4	1.07	None
Larval midgut	245 ± 17	4 of 4	0.83	None
Larval tubule	383 ± 27	4 of 4	1.30	Up
Larval hindgut	283 ± 31	4 of 4	0.96	None
Larval fat body	256 ± 17	4 of 4	0.90	None
Larval trachea	395 ± 47	4 of 4	1.34	Up
Larval carcass	799 ± 73	4 of 4	2.71	Up
S2 cells (growing)	548 ± 14	4 of 4	1.86	Up
Whole fly	295 ± 13	4 of 4

Looking for FBgn0250753. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720