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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250755 through 18771 annotations produced 2 hits



CG11574 (CG42233):

Annotation Number : CG11574
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250755
Gbrowse : chr3R:27625893-27626226 (-) // 100.0 //
Probeset : 1624013_at
Accessions : protein= NP_651899;, nucleotide= NM_143642;
FlyMine data for FBgn0250755.
BioGrid reports that CG11574 interacts with CG1487 CG2199 .
TRiP has 1 RNAi stocks for FBgn0250755 available for purchase.
VDRC has 5 RNAi stocks for FBgn0250755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 2.10Up
Head5 ± 10 of 4 0.70None
Eye7 ± 21 of 4 0.96None
Thoracicoabdominal ganglion15 ± 13 of 4 1.90Up
Salivary gland18 ± 60 of 4 2.40None
Crop9 ± 00 of 4 1.10None
Midgut2 ± 10 of 4 0.40Down
Tubule5 ± 00 of 4 0.70Down
Hindgut5 ± 10 of 4 0.70None
Heart6 ± 10 of 4 0.82None
Fat body11 ± 31 of 4 1.41None
Ovary11 ± 04 of 4 1.40None
Testis14 ± 24 of 4 1.80Up
Male accessory glands5 ± 10 of 4 0.70None
Virgin spermatheca5 ± 10 of 4 0.68None
Mated spermatheca3 ± 10 of 4 0.43None
Adult carcass6 ± 20 of 4 0.80None
Larval CNS14 ± 44 of 4 1.84Up
Larval Salivary gland5 ± 10 of 4 0.66None
Larval midgut2 ± 00 of 4 0.28Down
Larval tubule7 ± 10 of 4 0.90None
Larval hindgut6 ± 01 of 4 0.80None
Larval fat body8 ± 31 of 4 1.10None
Larval trachea10 ± 12 of 4 1.31None
Larval carcass3 ± 10 of 4 0.43None
S2 cells (growing)23 ± 24 of 4 2.95Up
Whole fly7 ± 10 of 4



CG11574 (CG42233):

Annotation Number : CG2112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250755
Gbrowse : chr3R:27628504-27630828 (-) // 100.0 //
Probeset : 1626904_at
Accessions : protein= NP_651899;, nucleotide= NM_143642;
FlyMine data for FBgn0250755.
TRiP has 1 RNAi stocks for FBgn0250755 available for purchase.
VDRC has 5 RNAi stocks for FBgn0250755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 04 of 4 2.10Up
Head4 ± 20 of 4 0.60None
Eye4 ± 00 of 4 0.69None
Thoracicoabdominal ganglion10 ± 30 of 4 1.60None
Salivary gland8 ± 20 of 4 1.37None
Crop4 ± 00 of 4 0.70None
Midgut2 ± 10 of 4 0.50None
Tubule2 ± 00 of 4 0.40Down
Hindgut4 ± 10 of 4 0.70None
Heart5 ± 10 of 4 0.87None
Fat body7 ± 10 of 4 1.10None
Ovary10 ± 11 of 4 1.70None
Testis13 ± 03 of 4 2.10Up
Male accessory glands5 ± 30 of 4 0.90None
Virgin spermatheca2 ± 00 of 4 0.32None
Mated spermatheca1 ± 00 of 4 0.30None
Adult carcass8 ± 10 of 4 1.40None
Larval CNS7 ± 23 of 4 1.19None
Larval Salivary gland3 ± 10 of 4 0.62None
Larval midgut5 ± 10 of 4 0.94None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut4 ± 00 of 4 0.74None
Larval fat body10 ± 31 of 4 1.70None
Larval trachea5 ± 10 of 4 0.85None
Larval carcass3 ± 10 of 4 0.47None
S2 cells (growing)22 ± 24 of 4 3.55Up
Whole fly6 ± 10 of 4

Looking for FBgn0250755. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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