FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0250757 through 18771 annotations produced 5 hits

CG31090 (CG42235):

Annotation Number : CG8966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21744923-21746289 (+) // 100.0 //
Probeset : 1640639_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG8966 is a close match (1e-41) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 0	4 of 4	1.30	None
Head	10 ± 1	3 of 4	0.50	Down
Eye	3 ± 0	0 of 4	0.15	Down
Thoracicoabdominal ganglion	40 ± 3	4 of 4	2.00	Up
Salivary gland	11 ± 1	1 of 4	0.54	Down
Crop	4 ± 1	0 of 4	0.20	Down
Midgut	4 ± 1	0 of 4	0.20	Down
Tubule	795 ± 77	4 of 4	38.50	Up
Hindgut	3 ± 1	0 of 4	0.10	Down
Heart	4 ± 1	1 of 4	0.22	Down
Fat body	8 ± 2	1 of 4	0.42	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	4 ± 0	1 of 4	0.20	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	7 ± 0	0 of 4	0.34	Down
Mated spermatheca	4 ± 1	0 of 4	0.23	Down
Adult carcass	5 ± 2	0 of 4	0.30	Down
Larval CNS	12 ± 3	4 of 4	0.62	None
Larval Salivary gland	3 ± 0	0 of 4	0.18	Down
Larval midgut	2 ± 0	0 of 4	0.13	Down
Larval tubule	1365 ± 105	4 of 4	66.10	Up
Larval hindgut	10 ± 0	3 of 4	0.52	Down
Larval fat body	7 ± 2	1 of 4	0.40	Down
Larval trachea	2 ± 1	0 of 4	0.11	Down
Larval carcass	5 ± 1	1 of 4	0.24	Down
S2 cells (growing)	1 ± 0	0 of 4	0.09	Down
Whole fly	20 ± 2	3 of 4

CG31090 (CG42235):

Annotation Number : CG8932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21736433-21738195 (+) // 100.0 //
Probeset : 1627633_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG8932 is a close match (2e-11) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	4 of 4	0.30	Down
Head	4 ± 1	0 of 4	0.10	Down
Eye	3 ± 0	0 of 4	0.09	Down
Thoracicoabdominal ganglion	14 ± 1	4 of 4	0.40	None
Salivary gland	8 ± 2	0 of 4	0.24	Down
Crop	5 ± 0	0 of 4	0.10	Down
Midgut	6 ± 0	0 of 4	0.20	Down
Tubule	1763 ± 176	4 of 4	47.80	Up
Hindgut	5 ± 1	0 of 4	0.10	Down
Heart	3 ± 0	0 of 4	0.09	Down
Fat body	8 ± 4	1 of 4	0.24	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	2 ± 1	1 of 4	0.10	Down
Male accessory glands	7 ± 3	1 of 4	0.20	Down
Virgin spermatheca	8 ± 2	2 of 4	0.23	Down
Mated spermatheca	4 ± 1	0 of 4	0.12	Down
Adult carcass	13 ± 3	0 of 4	0.40	None
Larval CNS	4 ± 1	1 of 4	0.11	Down
Larval Salivary gland	2 ± 0	0 of 4	0.06	Down
Larval midgut	1 ± 0	0 of 4	0.04	Down
Larval tubule	1357 ± 40	4 of 4	36.80	Up
Larval hindgut	11 ± 3	3 of 4	0.31	Down
Larval fat body	12 ± 2	2 of 4	0.30	None
Larval trachea	2 ± 1	0 of 4	0.07	Down
Larval carcass	2 ± 1	0 of 4	0.07	Down
S2 cells (growing)	4 ± 0	0 of 4	0.13	Down
Whole fly	36 ± 8	4 of 4

CG31090 (CG42235):

Annotation Number : CG8934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21738942-21740225 (+) // 100.0 //
Probeset : 1638858_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG8934 is a close match (2e-24) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	55 ± 4	4 of 4	0.80	None
Head	11 ± 1	2 of 4	0.20	Down
Eye	1 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	76 ± 2	4 of 4	1.10	None
Salivary gland	10 ± 2	0 of 4	0.15	Down
Crop	2 ± 1	0 of 4	0.00	Down
Midgut	4 ± 1	0 of 4	0.10	Down
Tubule	3328 ± 228	4 of 4	46.70	Up
Hindgut	2 ± 1	0 of 4	0.00	Down
Heart	5 ± 1	0 of 4	0.08	Down
Fat body	29 ± 53	1 of 4	0.41	None
Ovary	1 ± 1	0 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.00	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	6 ± 2	1 of 4	0.09	Down
Mated spermatheca	4 ± 2	0 of 4	0.06	Down
Adult carcass	9 ± 4	0 of 4	0.10	Down
Larval CNS	9 ± 1	2 of 4	0.13	Down
Larval Salivary gland	4 ± 3	0 of 4	0.06	Down
Larval midgut	3 ± 1	0 of 4	0.05	Down
Larval tubule	3817 ± 117	4 of 4	53.60	Up
Larval hindgut	33 ± 4	4 of 4	0.46	None
Larval fat body	6 ± 4	0 of 4	0.10	Down
Larval trachea	2 ± 1	0 of 4	0.03	Down
Larval carcass	2 ± 1	0 of 4	0.04	Down
S2 cells (growing)	2 ± 0	0 of 4	0.03	Down
Whole fly	71 ± 12	4 of 4

CG31090 (CG42235):

Annotation Number : CG31090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21732753-21742693 (+) // 100.0 //
Probeset : 1630249_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG31090 is a close match (7e-69) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
BioGrid reports that CG31090 interacts with CG7001 .
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	287 ± 10	4 of 4	9.80	Up
Head	79 ± 4	4 of 4	2.70	Up
Eye	7 ± 1	2 of 4	0.25	Down
Thoracicoabdominal ganglion	430 ± 14	4 of 4	14.70	Up
Salivary gland	19 ± 5	3 of 4	0.67	None
Crop	9 ± 1	1 of 4	0.30	Down
Midgut	8 ± 1	1 of 4	0.30	Down
Tubule	1425 ± 71	4 of 4	48.80	Up
Hindgut	6 ± 1	1 of 4	0.20	Down
Heart	6 ± 0	0 of 4	0.21	Down
Fat body	11 ± 5	2 of 4	0.39	Down
Ovary	4 ± 0	1 of 4	0.10	Down
Testis	2 ± 0	1 of 4	0.10	Down
Male accessory glands	9 ± 1	2 of 4	0.30	Down
Virgin spermatheca	6 ± 2	0 of 4	0.23	Down
Mated spermatheca	5 ± 1	1 of 4	0.19	Down
Adult carcass	13 ± 1	2 of 4	0.50	Down
Larval CNS	113 ± 4	4 of 4	3.88	Up
Larval Salivary gland	7 ± 2	3 of 4	0.27	Down
Larval midgut	8 ± 0	1 of 4	0.28	Down
Larval tubule	604 ± 32	4 of 4	20.70	Up
Larval hindgut	12 ± 1	4 of 4	0.42	Down
Larval fat body	9 ± 2	0 of 4	0.30	Down
Larval trachea	5 ± 2	1 of 4	0.20	Down
Larval carcass	9 ± 0	4 of 4	0.32	Down
S2 cells (growing)	4 ± 0	1 of 4	0.14	Down
Whole fly	29 ± 0	4 of 4

CG31090 (CG42235):

Annotation Number : CG8957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250757
Gbrowse : chr3R:21743185-21744095 (+) // 100.0 //
Probeset : 1628100_at
Accessions : protein= NP_001138111; /// NP_001138112; /// NP_651446; /// NP_651447; /// NP_733129;, nucleotide= NM_001144639; /// NM_001144640; /// NM_143189; /// NM_143189; /// NM_143190; /// NM_143190; /// NM_170250;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0250757.
Homophila reports that CG8957 is a close match (2e-28) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 11 RNAi stocks for FBgn0250757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 5	4 of 4	2.20	Up
Head	23 ± 1	4 of 4	0.50	None
Eye	2 ± 0	0 of 4	0.05	Down
Thoracicoabdominal ganglion	135 ± 9	4 of 4	2.90	Up
Salivary gland	15 ± 2	1 of 4	0.33	None
Crop	10 ± 1	0 of 4	0.20	None
Midgut	15 ± 1	2 of 4	0.30	None
Tubule	2466 ± 125	4 of 4	52.40	Up
Hindgut	10 ± 1	0 of 4	0.20	None
Heart	5 ± 1	0 of 4	0.12	Down
Fat body	25 ± 30	1 of 4	0.54	None
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	7 ± 1	2 of 4	0.20	Down
Male accessory glands	16 ± 2	0 of 4	0.30	None
Virgin spermatheca	7 ± 2	0 of 4	0.16	Down
Mated spermatheca	10 ± 1	0 of 4	0.22	None
Adult carcass	17 ± 3	0 of 4	0.40	None
Larval CNS	34 ± 4	4 of 4	0.74	None
Larval Salivary gland	7 ± 2	0 of 4	0.15	Down
Larval midgut	17 ± 1	3 of 4	0.38	None
Larval tubule	4436 ± 136	4 of 4	94.30	Up
Larval hindgut	37 ± 8	4 of 4	0.79	None
Larval fat body	13 ± 3	2 of 4	0.30	None
Larval trachea	4 ± 2	0 of 4	0.10	Down
Larval carcass	11 ± 3	1 of 4	0.24	None
S2 cells (growing)	6 ± 1	2 of 4	0.15	Down
Whole fly	47 ± 11	4 of 4

Looking for FBgn0250757. 5 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720