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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250785 through 18771 annotations produced 1 hits



varicose (vari):

Annotation Number : CG9326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250785
Gbrowse : chr2L:20789246-20797039 (-) // 100.0 //
Probeset : 1625358_s_at
Accessions : protein= NP_724288; /// NP_724289; /// NP_995733;, nucleotide= NM_165342; /// NM_165343; /// NM_206011;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035151 // regulation of tube size
Interpro : open tracheal system // inferred from mutant phenotype /// 0035159 // regulation of tube length
FlyMine data for FBgn0250785.
Homophila reports that CG9326 is a close match (2e-39) to human gene DLG3;MRX90;NEDLG;SAP102 (NP_065781), a gene associated with Mental retardation, X-linked-90 (3).
BioGrid reports that CG9326 interacts with CG9520 .
TRiP has 2 RNAi stocks for FBgn0250785 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 54 of 4 2.30Up
Head161 ± 154 of 4 2.50Up
Eye198 ± 94 of 4 3.10Up
Thoracicoabdominal ganglion198 ± 144 of 4 3.10Up
Salivary gland153 ± 114 of 4 2.40Up
Crop599 ± 204 of 4 9.40Up
Midgut29 ± 24 of 4 0.50Down
Tubule7 ± 00 of 4 0.10Down
Hindgut270 ± 54 of 4 4.20Up
Heart52 ± 54 of 4 0.82None
Fat body42 ± 24 of 4 0.66Down
Ovary53 ± 64 of 4 0.80None
Testis22 ± 14 of 4 0.40Down
Male accessory glands177 ± 164 of 4 2.80Up
Virgin spermatheca22 ± 14 of 4 0.35Down
Mated spermatheca24 ± 04 of 4 0.39Down
Adult carcass68 ± 14 of 4 1.10None
Larval CNS46 ± 144 of 4 0.73None
Larval Salivary gland182 ± 174 of 4 2.84Up
Larval midgut26 ± 44 of 4 0.42Down
Larval tubule21 ± 22 of 4 0.30Down
Larval hindgut150 ± 94 of 4 2.36Up
Larval fat body20 ± 31 of 4 0.30Down
Larval trachea232 ± 174 of 4 3.63Up
Larval carcass134 ± 84 of 4 2.10Up
S2 cells (growing)83 ± 44 of 4 1.31Up
Whole fly64 ± 54 of 4

Looking for FBgn0250785. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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