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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250815 through 18771 annotations produced 1 hits



Jonah 65A (Jon65Aiv):

Annotation Number : CG6467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250815
Gbrowse : chr3L:6032256-6033244 (+) // 99.56 //
Probeset : 1628800_at
Accessions : protein= NP_648012;, nucleotide= NM_139755;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0250815.
Homophila reports that CG6467 is a close match (3e-11) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
BioGrid reports that CG6467 interacts with CG6951 CG7109 CG7590 CG8177 CG9088 .
VDRC has 2 RNAi stocks for FBgn0250815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head86 ± 722 of 4 0.00Down
Eye47 ± 343 of 4 0.01Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.00Down
Salivary gland14 ± 80 of 4 0.00Down
Crop85 ± 462 of 4 0.00Down
Midgut6652 ± 1154 of 4 1.50Up
Tubule8 ± 20 of 4 0.00Down
Hindgut489 ± 404 of 4 0.10Down
Heart12 ± 12 of 4 0.00Down
Fat body14 ± 40 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis16 ± 161 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca8 ± 10 of 4 0.00Down
Mated spermatheca18 ± 71 of 4 0.00Down
Adult carcass123 ± 544 of 4 0.00Down
Larval CNS9 ± 91 of 4 0.00Down
Larval Salivary gland8 ± 30 of 4 0.00Down
Larval midgut5279 ± 1494 of 4 1.20Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut88 ± 253 of 4 0.02Down
Larval fat body522 ± 2613 of 4 0.10Down
Larval trachea657 ± 11703 of 4 0.15Down
Larval carcass28 ± 22 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly4393 ± 1734 of 4

Looking for FBgn0250815. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime