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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250819 through 18771 annotations produced 1 hits



anon-fast-evolving-2E7 (CG33521):

Annotation Number : CG32015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250819
Gbrowse : chr4:1206398-1208510 (+) // 100.0 //
Probeset : 1636112_s_at
Accessions : protein= NP_001014702; /// NP_001014703; /// NP_001014704; /// NP_001014705;, nucleotide= NM_001014702; /// NM_001014703; /// NM_001014704; /// NM_001014705;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0250819.
VDRC has 5 RNAi stocks for FBgn0250819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.10Down
Head53 ± 94 of 4 0.60Down
Eye12 ± 23 of 4 0.15Down
Thoracicoabdominal ganglion9 ± 12 of 4 0.10Down
Salivary gland16 ± 31 of 4 0.19Down
Crop411 ± 304 of 4 4.80Up
Midgut20 ± 14 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut123 ± 54 of 4 1.40Up
Heart196 ± 154 of 4 2.29Up
Fat body13 ± 34 of 4 0.16Down
Ovary5 ± 14 of 4 0.10Down
Testis8 ± 04 of 4 0.10Down
Male accessory glands34 ± 34 of 4 0.40Down
Virgin spermatheca7 ± 13 of 4 0.09Down
Mated spermatheca8 ± 02 of 4 0.09Down
Adult carcass201 ± 124 of 4 2.30Up
Larval CNS4 ± 22 of 4 0.06Down
Larval Salivary gland5 ± 12 of 4 0.06Down
Larval midgut15 ± 14 of 4 0.18Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut62 ± 84 of 4 0.73None
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea12 ± 43 of 4 0.14Down
Larval carcass224 ± 124 of 4 2.61Up
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly85 ± 74 of 4

Looking for FBgn0250819. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime