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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250821 through 18771 annotations produced 1 hits



NEST:bs06h05 (CG14644):

Annotation Number : CG14644
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250821
Gbrowse : chr3R:77608-78741 (-) // 100.0 //
Probeset : 1627147_at
Accessions : protein= NP_649445;, nucleotide= NM_141188;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0250821.
Homophila reports that CG14644 is a close match (1e-42) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
VDRC has 1 RNAi stocks for FBgn0250821 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland13 ± 40 of 4 0.29Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.00Down
Heart4 ± 10 of 4 0.10Down
Fat body5 ± 20 of 4 0.12Down
Ovary1 ± 00 of 4 0.00Down
Testis604 ± 54 of 413.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca7 ± 10 of 4 0.16Down
Mated spermatheca7 ± 20 of 4 0.16Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body68 ± 243 of 4 1.50None
Larval trachea3 ± 20 of 4 0.09Down
Larval carcass4 ± 10 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly45 ± 34 of 4

Looking for FBgn0250821. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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