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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250823 through 18771 annotations produced 1 hits



gilgamesh (gish):

Annotation Number : CG6963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250823
Gbrowse : chr3R:12098175-12127936 (+) // 100.0 //
Probeset : 1626805_s_at
Accessions : protein= NP_001014626; /// NP_001014627; /// NP_001014628; /// NP_001163628; /// NP_524941; /// NP_732123; /// NP_732124; /// NP_732125; /// NP_788683;, nucleotide= NM_001014626; /// NM_001014627; /// NM_001014628; /// NM_001170157; /// NM_080202; /// NM_169711; /// NM_169712; /// NM_169713; /// NM_176506;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0250823.
Homophila reports that CG6963 is a close match (4e-36) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
BioGrid reports that CG6963 interacts with CG11121 CG4637 CG1464 .
TRiP has 3 RNAi stocks for FBgn0250823 available for purchase.
VDRC has 2 RNAi stocks for FBgn0250823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain309 ± 74 of 4 2.00Up
Head148 ± 44 of 4 1.00None
Eye575 ± 414 of 4 3.70Up
Thoracicoabdominal ganglion256 ± 234 of 4 1.60Up
Salivary gland94 ± 54 of 4 0.61Down
Crop138 ± 34 of 4 0.90None
Midgut190 ± 24 of 4 1.20Up
Tubule143 ± 94 of 4 0.90None
Hindgut132 ± 24 of 4 0.90Down
Heart139 ± 34 of 4 0.90None
Fat body88 ± 44 of 4 0.57Down
Ovary413 ± 74 of 4 2.70Up
Testis64 ± 34 of 4 0.40Down
Male accessory glands67 ± 74 of 4 0.40Down
Virgin spermatheca60 ± 44 of 4 0.39Down
Mated spermatheca61 ± 34 of 4 0.40Down
Adult carcass72 ± 74 of 4 0.50Down
Larval CNS253 ± 204 of 4 1.63Up
Larval Salivary gland103 ± 14 of 4 0.67Down
Larval midgut159 ± 64 of 4 1.03None
Larval tubule190 ± 84 of 4 1.20Up
Larval hindgut169 ± 54 of 4 1.09None
Larval fat body94 ± 24 of 4 0.60Down
Larval trachea211 ± 74 of 4 1.36Up
Larval carcass94 ± 74 of 4 0.61Down
S2 cells (growing)120 ± 84 of 4 0.77Down
Whole fly155 ± 64 of 4

Looking for FBgn0250823. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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