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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250832 through 18771 annotations produced 1 hits


Ductus ejaculatorius peptide 99B (Dup99B):

Annotation Number : S.C3R003400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250832
Gbrowse : chr3R:25540853-25541071 (-) // 100.0 //
Probeset : 1639365_at
Accessions : protein= NP_996305;, nucleotide= NM_206582;
Pathway : post-mating // inferred from mutant phenotype /// 0046008 // regulation of female receptivity
Interpro : post-mating // inferred from electronic annotation /// 0046662 // regulation of oviposition // traceable author stateme
FlyMine data for FBgn0250832.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland7 ± 30 of 4 0.01Down
Crop6 ± 00 of 4 0.00Down
Midgut14 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart3 ± 00 of 4 0.00Down
Fat body3 ± 20 of 4 0.00Down
Ovary1 ± 00 of 4 0.00Down
Testis73 ± 254 of 4 0.10Down
Male accessory glands2915 ± 4864 of 4 2.40Up
Virgin spermatheca4 ± 10 of 4 0.00Down
Mated spermatheca7 ± 20 of 4 0.01Down
Adult carcass8 ± 10 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.00Down
Larval Salivary gland5 ± 20 of 4 0.00Down
Larval midgut9 ± 20 of 4 0.01Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.00Down
Larval fat body7 ± 31 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.00Down
Larval carcass6 ± 10 of 4 0.01Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly1197 ± 1624 of 4

Looking for FBgn0250832. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime