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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250836 through 18771 annotations produced 1 hits


anon-SAGE:Wang-073 /// heat-shock protein 70 (CG8628 /// Hsc70-4):

Annotation Number : CG8628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250836
Gbrowse : chr3L:7124101-7124489 (+) // 100.0 //
Probeset : 1630109_at
Accessions : protein= NP_001163366; /// NP_648083;, nucleotide= NM_001169895; /// NM_139826;
Pathway : via spliceosome // inferred by curator /// 0001700 // embryonic development via the syncytial blastoderm // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
FlyMine data for FBgn0250836.
VDRC has 3 RNAi stocks for FBgn0250836 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 20 of 4 0.00Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.00Down
Crop1 ± 00 of 4 0.00Down
Midgut5278 ± 1424 of 4 4.00Up
Tubule28 ± 201 of 4 0.00Down
Hindgut3272 ± 1624 of 4 2.50Up
Heart0 ± 00 of 4 0.00Down
Fat body0 ± 00 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.00Down
Mated spermatheca0 ± 00 of 4 0.00Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut4125 ± 5134 of 4 3.10Up
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut356 ± 604 of 4 0.27Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly1331 ± 2824 of 4

Looking for FBgn0250836. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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