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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250838 through 18771 annotations produced 1 hits



anon-SAGE:Wang-079 (CG30415):

Annotation Number : CG30415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250838
Gbrowse : chr2R:19273194-19273948 (-) // 100.0 //
Probeset : 1627732_s_at
Accessions : protein= NP_726318; /// NP_726319;, nucleotide= NM_166599; /// NM_166600;
FlyMine data for FBgn0250838.
BioGrid reports that CG30415 interacts with CG7173 .
VDRC has 2 RNAi stocks for FBgn0250838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2063 ± 384 of 4 0.90None
Head2555 ± 424 of 4 1.10Up
Eye2748 ± 834 of 4 1.22Up
Thoracicoabdominal ganglion2362 ± 434 of 4 1.00None
Salivary gland5327 ± 1434 of 4 2.36Up
Crop2328 ± 1184 of 4 1.00None
Midgut2696 ± 424 of 4 1.20Up
Tubule2152 ± 344 of 4 1.00Down
Hindgut3515 ± 1524 of 4 1.60Up
Heart3148 ± 1004 of 4 1.39Up
Fat body2990 ± 2814 of 4 1.32Up
Ovary1334 ± 234 of 4 0.60Down
Testis1087 ± 154 of 4 0.50Down
Male accessory glands1249 ± 174 of 4 0.60Down
Virgin spermatheca2805 ± 804 of 4 1.24Up
Mated spermatheca2673 ± 404 of 4 1.18Up
Adult carcass4131 ± 1584 of 4 1.80Up
Larval CNS1347 ± 904 of 4 0.60Down
Larval Salivary gland2154 ± 1044 of 4 0.95None
Larval midgut2491 ± 894 of 4 1.10None
Larval tubule1943 ± 1644 of 4 0.90None
Larval hindgut2871 ± 384 of 4 1.27Up
Larval fat body1265 ± 614 of 4 0.60Down
Larval trachea1729 ± 944 of 4 0.77Down
Larval carcass3339 ± 2724 of 4 1.48Up
S2 cells (growing)1339 ± 244 of 4 0.59Down
Whole fly2260 ± 744 of 4

Looking for FBgn0250838. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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