FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0250839 through 18771 annotations produced 1 hits

anon-SAGE:Wang-083 /// /// (CG2016 /// DmauCG2016 /// DsimCG2016):

Annotation Number : CG2016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250839
Gbrowse : chr3R:782716-787070 (-) // 100.0 //
Probeset : 1627499_at
Accessions : protein= NP_649508;, nucleotide= NM_141251;
FlyMine data for FBgn0250839.
TRiP has 1 RNAi stocks for FBgn0250839 available for purchase.
VDRC has 2 RNAi stocks for FBgn0250839 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1990 ± 71	4 of 4	43.60	Up
Head	695 ± 26	4 of 4	15.20	Up
Eye	639 ± 51	4 of 4	14.02	Up
Thoracicoabdominal ganglion	23 ± 3	4 of 4	0.50	Down
Salivary gland	2 ± 1	0 of 4	0.06	Down
Crop	4 ± 1	0 of 4	0.10	Down
Midgut	2 ± 1	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.00	Down
Hindgut	50 ± 3	4 of 4	1.10	None
Heart	4 ± 2	1 of 4	0.09	Down
Fat body	11 ± 2	2 of 4	0.25	Down
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	6 ± 1	2 of 4	0.20	Down
Male accessory glands	3 ± 1	0 of 4	0.10	Down
Virgin spermatheca	9 ± 1	3 of 4	0.20	Down
Mated spermatheca	8 ± 1	2 of 4	0.18	Down
Adult carcass	38 ± 5	4 of 4	0.80	None
Larval CNS	16 ± 2	4 of 4	0.36	Down
Larval Salivary gland	1 ± 0	0 of 4	0.04	Down
Larval midgut	2 ± 0	0 of 4	0.06	Down
Larval tubule	3 ± 1	0 of 4	0.10	Down
Larval hindgut	19 ± 3	4 of 4	0.42	Down
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	204 ± 40	4 of 4	4.47	Up
Larval carcass	45 ± 16	4 of 4	0.99	None
S2 cells (growing)	2 ± 1	0 of 4	0.06	Down
Whole fly	45 ± 6	4 of 4

Looking for FBgn0250839. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720