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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250841 through 18771 annotations produced 1 hits


anon-SAGE:Wang-110 (CG17242):

Annotation Number : CG17242
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250841
Gbrowse : chr2L:2268355-2269093 (-) // 100.0 //
Probeset : 1623824_at
Accessions : protein= NP_722787;, nucleotide= NM_164472;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0250841.
Homophila reports that CG17242 is a close match (5e-11) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 2 RNAi stocks for FBgn0250841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head6 ± 11 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.02Down
Crop6 ± 20 of 4 0.00Down
Midgut11 ± 10 of 4 0.00Down
Tubule6 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body2 ± 10 of 4 0.00Down
Ovary2 ± 11 of 4 0.00Down
Testis51 ± 182 of 4 0.10Down
Male accessory glands2308 ± 3674 of 4 3.60Up
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.01Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS6 ± 20 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut9 ± 20 of 4 0.01Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea3 ± 31 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)5 ± 10 of 4 0.01Down
Whole fly645 ± 1104 of 4

Looking for FBgn0250841. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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