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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250842 through 18771 annotations produced 1 hits



anon-SAGE:Wang-113 (CG17575):

Annotation Number : CG17575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250842
Gbrowse : chr2R:8733048-8734101 (-) // 100.0 //
Probeset : 1632350_at
Accessions : protein= NP_610821;, nucleotide= NM_136977;
Pathway : post-mating // inferred from mutant phenotype /// 0046692 // sperm competition // inferred from direct assay"
Interpro : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0250842.
BioGrid reports that CG17575 interacts with CG4380 .
VDRC has 2 RNAi stocks for FBgn0250842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland8 ± 10 of 4 0.03Down
Crop5 ± 10 of 4 0.00Down
Midgut9 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body5 ± 40 of 4 0.02Down
Ovary1 ± 10 of 4 0.00Down
Testis24 ± 102 of 4 0.10Down
Male accessory glands10987 ± 3834 of 434.00Up
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca6 ± 10 of 4 0.02Down
Adult carcass20 ± 92 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland7 ± 20 of 4 0.02Down
Larval midgut6 ± 20 of 4 0.02Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.00Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly322 ± 404 of 4

Looking for FBgn0250842. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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