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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250844 through 18771 annotations produced 1 hits


anon-SAGE:Wang-118 (CG4218):

Annotation Number : CG4218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250844
Gbrowse : chr2L:14547634-14549075 (-) // 100.0 //
Probeset : 1628228_at
Accessions : protein= NP_609714;, nucleotide= NM_135870;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0250844.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 20 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland8 ± 31 of 4 0.05Down
Crop5 ± 20 of 4 0.00Down
Midgut5 ± 00 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.02Down
Fat body7 ± 30 of 4 0.05Down
Ovary2 ± 00 of 4 0.00Down
Testis1811 ± 514 of 410.80Up
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass10 ± 30 of 4 0.10Down
Larval CNS5 ± 00 of 4 0.03Down
Larval Salivary gland5 ± 00 of 4 0.03Down
Larval midgut12 ± 21 of 4 0.08Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.03Down
Larval fat body129 ± 603 of 4 0.80None
Larval trachea9 ± 111 of 4 0.06Down
Larval carcass4 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 00 of 4 0.02Down
Whole fly167 ± 74 of 4

Looking for FBgn0250844. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime