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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250848 through 18771 annotations produced 1 hits



26-29kD-proteinase (26-29-p):

Annotation Number : CG8947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250848
Gbrowse : chr3L:13987334-13989678 (+) // 100.0 //
Probeset : 1638201_at
Accessions : protein= NP_620470;, nucleotide= NM_138985;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0250848.
Homophila reports that CG8947 is a close match (2e-24) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).
BioGrid reports that CG8947 interacts with CG9654 .
TRiP has 1 RNAi stocks for FBgn0250848 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250848 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain514 74 of 4 0.30Down
Head626 334 of 4 0.30Down
Eye343 134 of 4 0.19Down
Thoracicoabdominal ganglion549 224 of 4 0.30Down
Salivary gland222 174 of 4 0.12Down
Crop526 214 of 4 0.30Down
Midgut564 204 of 4 0.30Down
Tubule530 314 of 4 0.30Down
Hindgut481 164 of 4 0.30Down
Heart586 434 of 4 0.32Down
Fat body836 484 of 4 0.46Down
Ovary2446 484 of 4 1.30Up
Testis541 214 of 4 0.30Down
Male accessory glands182 174 of 4 0.10Down
Virgin spermatheca1185 434 of 4 0.65Down
Mated spermatheca820 924 of 4 0.45Down
Adult carcass788 244 of 4 0.40Down
Larval CNS572 364 of 4 0.32Down
Larval Salivary gland728 204 of 4 0.40Down
Larval midgut914 554 of 4 0.50Down
Larval tubule1231 234 of 4 0.70Down
Larval hindgut699 294 of 4 0.39Down
Larval fat body1667 2074 of 4 0.90None
Larval trachea835 554 of 4 0.46Down
Larval carcass655 364 of 4 0.36Down
S2 cells (growing)1968 224 of 4 1.08Up
Whole fly1814 494 of 4

Looking for FBgn0250848. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime