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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250849 through 18771 annotations produced 1 hits


anon-SAGE:Wang-131 (CG32388):

Annotation Number : CG32388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250849
Gbrowse : chr3L:6976571-6977672 (-) // 100.0 //
Probeset : 1628307_at
Accessions : protein= NP_648429; /// NP_729198;, nucleotide= NM_140172; /// NM_168183;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0250849.
VDRC has 3 RNAi stocks for FBgn0250849 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.01Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 10 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis2051 ± 414 of 4 7.60Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca3 ± 00 of 4 0.01Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body202 ± 1164 of 4 0.70None
Larval trachea10 ± 131 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)3 ± 10 of 4 0.01Down
Whole fly271 ± 294 of 4

Looking for FBgn0250849. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime