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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250850 through 18771 annotations produced 1 hits



rigor mortis (rig):

Annotation Number : CG30149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250850
Gbrowse : chr2R:16521380-16528191 (-) // 100.0 //
Probeset : 1640239_at
Accessions : protein= NP_611499;, nucleotide= NM_137655;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0035075 // response to ecdysone // inferred from mutant phen
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0250850.
BioGrid reports that CG30149 interacts with CG33183 CG8676 .
TRiP has 1 RNAi stocks for FBgn0250850 available for purchase.
VDRC has 2 RNAi stocks for FBgn0250850 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 14 of 4 0.30Down
Head34 14 of 4 0.20Down
Eye39 14 of 4 0.22Down
Thoracicoabdominal ganglion48 24 of 4 0.30Down
Salivary gland49 33 of 4 0.27Down
Crop49 24 of 4 0.30Down
Midgut56 04 of 4 0.30Down
Tubule35 24 of 4 0.20Down
Hindgut52 34 of 4 0.30Down
Heart45 14 of 4 0.25Down
Fat body50 64 of 4 0.28Down
Ovary508 214 of 4 2.80Up
Testis50 44 of 4 0.30Down
Male accessory glands75 34 of 4 0.40Down
Virgin spermatheca56 34 of 4 0.31Down
Mated spermatheca57 24 of 4 0.31Down
Adult carcass50 44 of 4 0.30Down
Larval CNS333 144 of 4 1.84Up
Larval Salivary gland57 34 of 4 0.32Down
Larval midgut38 53 of 4 0.21Down
Larval tubule48 44 of 4 0.30Down
Larval hindgut54 54 of 4 0.30Down
Larval fat body42 24 of 4 0.20Down
Larval trachea129 124 of 4 0.71Down
Larval carcass63 64 of 4 0.35Down
S2 cells (growing)180 54 of 4 1.00None
Whole fly181 144 of 4

Looking for FBgn0250850. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime