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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250862 through 18771 annotations produced 1 hits



phospholipase A2 (CG42237):

Annotation Number : CG4346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250862
Gbrowse : chrX:13009169-13017100 (+) // 100.0 //
Probeset : 1640833_at
Accessions : protein= NP_572855;, nucleotide= NM_132627;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferr
FlyMine data for FBgn0250862.
TRiP has 1 RNAi stocks for FBgn0250862 available for purchase.
VDRC has 1 RNAi stocks for FBgn0250862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head14 ± 13 of 4 0.50Down
Eye10 ± 14 of 4 0.32Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland28 ± 63 of 4 0.88None
Crop9 ± 11 of 4 0.30Down
Midgut11 ± 10 of 4 0.40Down
Tubule7 ± 10 of 4 0.20Down
Hindgut17 ± 14 of 4 0.50Down
Heart5 ± 01 of 4 0.17Down
Fat body8 ± 30 of 4 0.25Down
Ovary5 ± 11 of 4 0.20Down
Testis31 ± 24 of 4 1.00None
Male accessory glands11 ± 22 of 4 0.40Down
Virgin spermatheca7 ± 11 of 4 0.23Down
Mated spermatheca14 ± 23 of 4 0.43Down
Adult carcass15 ± 11 of 4 0.50Down
Larval CNS5 ± 32 of 4 0.16Down
Larval Salivary gland9 ± 23 of 4 0.29Down
Larval midgut12 ± 21 of 4 0.37Down
Larval tubule6 ± 12 of 4 0.20Down
Larval hindgut27 ± 44 of 4 0.85None
Larval fat body7 ± 00 of 4 0.20Down
Larval trachea49 ± 24 of 4 1.50Up
Larval carcass23 ± 34 of 4 0.71None
S2 cells (growing)5 ± 11 of 4 0.18Down
Whole fly32 ± 34 of 4

Looking for FBgn0250862. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime