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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250867 through 18771 annotations produced 1 hits



(CG42238):

Annotation Number : CG9266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250867
Gbrowse : chr2L:20965518-20968943 (-) // 100.0 //
Probeset : 1626120_at
Accessions : protein= NP_001137845; /// NP_001137846;, nucleotide= NM_001144373; /// NM_001144374;
FlyMine data for FBgn0250867.
BioGrid reports that CG9266 interacts with CG9609 .
VDRC has 6 RNAi stocks for FBgn0250867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain473 ± 204 of 413.50Up
Head62 ± 44 of 4 1.80Up
Eye111 ± 84 of 4 3.18Up
Thoracicoabdominal ganglion227 ± 234 of 4 6.50Up
Salivary gland25 ± 101 of 4 0.72None
Crop33 ± 14 of 4 1.00None
Midgut51 ± 74 of 4 1.50None
Tubule28 ± 23 of 4 0.80Down
Hindgut54 ± 14 of 4 1.50Up
Heart29 ± 34 of 4 0.84None
Fat body44 ± 43 of 4 1.26Up
Ovary24 ± 14 of 4 0.70Down
Testis6 ± 02 of 4 0.20Down
Male accessory glands9 ± 20 of 4 0.30Down
Virgin spermatheca43 ± 34 of 4 1.25None
Mated spermatheca51 ± 34 of 4 1.45Up
Adult carcass48 ± 13 of 4 1.40Up
Larval CNS79 ± 184 of 4 2.25Up
Larval Salivary gland5 ± 10 of 4 0.16Down
Larval midgut36 ± 34 of 4 1.04None
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut32 ± 24 of 4 0.91None
Larval fat body27 ± 33 of 4 0.80None
Larval trachea29 ± 44 of 4 0.84None
Larval carcass16 ± 04 of 4 0.47Down
S2 cells (growing)56 ± 44 of 4 1.61Up
Whole fly35 ± 14 of 4

Looking for FBgn0250867. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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