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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250869 through 18771 annotations produced 1 hits



(CG42240):

Annotation Number : CG15893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250869
Gbrowse : chrX:6224890-6226800 (+) // 100.0 //
Probeset : 1627270_at
Accessions : protein= NP_001138164;, nucleotide= NM_001144692;
FlyMine data for FBgn0250869.
VDRC has 3 RNAi stocks for FBgn0250869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain384 ± 74 of 4 1.20None
Head359 ± 294 of 4 1.10None
Eye319 ± 144 of 4 0.98None
Thoracicoabdominal ganglion306 ± 194 of 4 0.90None
Salivary gland424 ± 164 of 4 1.30Up
Crop646 ± 384 of 4 2.00Up
Midgut300 ± 234 of 4 0.90None
Tubule190 ± 534 of 4 0.60Down
Hindgut371 ± 174 of 4 1.10None
Heart293 ± 284 of 4 0.90None
Fat body144 ± 244 of 4 0.44Down
Ovary499 ± 134 of 4 1.50Up
Testis47 ± 34 of 4 0.10Down
Male accessory glands174 ± 134 of 4 0.50Down
Virgin spermatheca161 ± 124 of 4 0.49Down
Mated spermatheca184 ± 24 of 4 0.56Down
Adult carcass471 ± 254 of 4 1.40Up
Larval CNS63 ± 114 of 4 0.20Down
Larval Salivary gland58 ± 84 of 4 0.18Down
Larval midgut69 ± 24 of 4 0.21Down
Larval tubule38 ± 34 of 4 0.10Down
Larval hindgut40 ± 14 of 4 0.12Down
Larval fat body193 ± 174 of 4 0.60Down
Larval trachea119 ± 304 of 4 0.37Down
Larval carcass126 ± 324 of 4 0.39Down
S2 cells (growing)37 ± 34 of 4 0.11Down
Whole fly326 ± 304 of 4

Looking for FBgn0250869. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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