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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250871 through 18771 annotations produced 1 hits



papillote (pot):

Annotation Number : CG2467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250871
Gbrowse : chrX:11801935-11811266 (-) // 100.0 //
Probeset : 1625154_s_at
Accessions : protein= NP_572768; /// NP_727583;, nucleotide= NM_132540; /// NM_167313;
Pathway : 0045177 // apical part of cell // inferred from direct assay
FlyMine data for FBgn0250871.
BioGrid reports that CG2467 interacts with CG30084 .
VDRC has 2 RNAi stocks for FBgn0250871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.20Down
Head109 ± 74 of 4 2.80Up
Eye82 ± 44 of 4 2.09Up
Thoracicoabdominal ganglion6 ± 22 of 4 0.20Down
Salivary gland267 ± 104 of 4 6.79Up
Crop427 ± 144 of 410.80Up
Midgut14 ± 12 of 4 0.40Down
Tubule6 ± 01 of 4 0.20Down
Hindgut178 ± 24 of 4 4.50Up
Heart12 ± 24 of 4 0.32Down
Fat body17 ± 34 of 4 0.45Down
Ovary7 ± 14 of 4 0.20Down
Testis12 ± 14 of 4 0.30Down
Male accessory glands15 ± 23 of 4 0.40Down
Virgin spermatheca19 ± 04 of 4 0.50Down
Mated spermatheca34 ± 74 of 4 0.87None
Adult carcass109 ± 124 of 4 2.80Up
Larval CNS31 ± 44 of 4 0.79Down
Larval Salivary gland105 ± 74 of 4 2.68Up
Larval midgut21 ± 14 of 4 0.53Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut392 ± 184 of 4 9.96Up
Larval fat body4 ± 00 of 4 0.10Down
Larval trachea1078 ± 644 of 427.35Up
Larval carcass862 ± 334 of 421.87Up
S2 cells (growing)108 ± 74 of 4 2.75Up
Whole fly39 ± 04 of 4

Looking for FBgn0250871. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime