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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250903 through 18771 annotations produced 1 hits



/// lemming (CG34441 /// lmg):

Annotation Number : CG18042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085470 /// FBgn0250903
Gbrowse : chr2L:8526543-8528618 (-) // 99.71 //
Probeset : 1639494_at
Accessions : protein= NP_001097122; /// NP_001097123; /// NP_001097124; /// NP_001097125;, nucleotide= NM_001103652; /// NM_001103653; /// NM_001103654; /// NM_001103655;
Pathway : 0005680 // anaphase-promoting complex // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0085470 /// FBgn0250903.
BioGrid reports that CG18042 interacts with CG2903 CG9242 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 14 of 4 0.50Down
Head46 ± 74 of 4 0.40Down
Eye21 ± 03 of 4 0.18Down
Thoracicoabdominal ganglion39 ± 54 of 4 0.30Down
Salivary gland58 ± 33 of 4 0.49Down
Crop66 ± 44 of 4 0.60Down
Midgut48 ± 34 of 4 0.40Down
Tubule31 ± 14 of 4 0.30Down
Hindgut40 ± 24 of 4 0.30Down
Heart34 ± 14 of 4 0.29Down
Fat body47 ± 54 of 4 0.40Down
Ovary211 ± 44 of 4 1.80Up
Testis218 ± 54 of 4 1.80Up
Male accessory glands49 ± 34 of 4 0.40Down
Virgin spermatheca38 ± 14 of 4 0.32Down
Mated spermatheca41 ± 04 of 4 0.35Down
Adult carcass42 ± 44 of 4 0.40Down
Larval CNS91 ± 44 of 4 0.77Down
Larval Salivary gland84 ± 14 of 4 0.71Down
Larval midgut34 ± 13 of 4 0.29Down
Larval tubule59 ± 34 of 4 0.50Down
Larval hindgut40 ± 24 of 4 0.34Down
Larval fat body95 ± 194 of 4 0.80None
Larval trachea44 ± 44 of 4 0.37Down
Larval carcass58 ± 44 of 4 0.50Down
S2 cells (growing)170 ± 44 of 4 1.43Up
Whole fly119 ± 34 of 4

Looking for FBgn0250903. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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