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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0250904 through 18771 annotations produced 1 hits

CG17763 (CG34434):

Annotation Number : CG17763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250904
Gbrowse : chrX:5509959-5510199 (-) // 100.0 //
Probeset : 1635160_at
Accessions : protein= NP_001096887;, nucleotide= NM_001103417;
FlyMine data for FBgn0250904.
VDRC has 2 RNAi stocks for FBgn0250904 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye2 10 of 4 0.09Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland11 30 of 4 0.43Down
Crop4 10 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.10Down
Heart1 10 of 4 0.07Down
Fat body3 20 of 4 0.14Down
Ovary3 00 of 4 0.10Down
Testis278 144 of 410.00Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.12Down
Mated spermatheca4 10 of 4 0.15Down
Adult carcass2 10 of 4 0.10Down
Larval CNS2 00 of 4 0.08Down
Larval Salivary gland3 10 of 4 0.14Down
Larval midgut3 10 of 4 0.11Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut2 00 of 4 0.10Down
Larval fat body105 444 of 4 3.80None
Larval trachea2 20 of 4 0.10Down
Larval carcass5 00 of 4 0.18Down
S2 cells (growing)2 00 of 4 0.07Down
Whole fly27 24 of 4

Looking for FBgn0250904. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime