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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0250906 through 18771 annotations produced 1 hits



Phosphoglycerate kinase (Pgk):

Annotation Number : CG3127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250906
Gbrowse : chr2L:2746879-2748522 (-) // 100.0 //
Probeset : 1639766_at
Accessions : protein= NP_476676;, nucleotide= NM_057328;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004618 // phosphoglycerate kinase activity //
FlyMine data for FBgn0250906.
Homophila reports that CG3127 is a close match (3e-160) to human gene PGK1;PGKA (NP_000282), a gene associated with Phosphoglycerate kinase 1 deficiency, 300653 (3).
TRiP has 4 RNAi stocks for FBgn0250906 available for purchase.
VDRC has 3 RNAi stocks for FBgn0250906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain871 ± 194 of 4 1.00None
Head1071 ± 404 of 4 1.20Up
Eye940 ± 304 of 4 1.04None
Thoracicoabdominal ganglion1069 ± 174 of 4 1.20Up
Salivary gland2680 ± 1344 of 4 2.97Up
Crop1448 ± 154 of 4 1.60Up
Midgut737 ± 264 of 4 0.80Down
Tubule1264 ± 204 of 4 1.40Up
Hindgut1495 ± 264 of 4 1.70Up
Heart1537 ± 644 of 4 1.70Up
Fat body1582 ± 1474 of 4 1.75Up
Ovary809 ± 184 of 4 0.90Down
Testis98 ± 74 of 4 0.10Down
Male accessory glands660 ± 104 of 4 0.70Down
Virgin spermatheca1741 ± 864 of 4 1.93Up
Mated spermatheca1584 ± 1144 of 4 1.76Up
Adult carcass2385 ± 1324 of 4 2.60Up
Larval CNS1188 ± 1734 of 4 1.32Up
Larval Salivary gland1294 ± 1124 of 4 1.43Up
Larval midgut552 ± 314 of 4 0.61Down
Larval tubule615 ± 274 of 4 0.70Down
Larval hindgut742 ± 454 of 4 0.82Down
Larval fat body782 ± 854 of 4 0.90None
Larval trachea1157 ± 854 of 4 1.28Up
Larval carcass2326 ± 2314 of 4 2.58Up
S2 cells (growing)888 ± 84 of 4 0.98None
Whole fly902 ± 274 of 4

Looking for FBgn0250906. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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