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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259108 through 18771 annotations produced 2 hits



Futsch (futsch):

Annotation Number : GH26828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259108
Gbrowse : chrX:1343109-1345426 (+) // 100.0 //
Probeset : 1638205_s_at
Accessions : protein= NP_001096864; /// NP_001162632;, nucleotide= NM_001103394; /// NM_001169161;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0259108.
TRiP has 1 RNAi stocks for FBgn0259108 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain571 244 of 422.60Up
Head159 174 of 4 6.30Up
Eye481 614 of 419.06Up
Thoracicoabdominal ganglion857 544 of 433.90Up
Salivary gland17 20 of 4 0.70None
Crop9 10 of 4 0.40Down
Midgut2 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart8 10 of 4 0.36Down
Fat body12 50 of 4 0.50Down
Ovary4 00 of 4 0.20Down
Testis2 01 of 4 0.10Down
Male accessory glands7 40 of 4 0.30Down
Virgin spermatheca11 10 of 4 0.45Down
Mated spermatheca11 30 of 4 0.45Down
Adult carcass23 33 of 4 0.90None
Larval CNS296 154 of 411.72Up
Larval Salivary gland4 10 of 4 0.19Down
Larval midgut3 10 of 4 0.14Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.14Down
Larval fat body3 10 of 4 0.10Down
Larval trachea14 91 of 4 0.57None
Larval carcass10 01 of 4 0.43Down
S2 cells (growing)8 10 of 4 0.34Down
Whole fly25 34 of 4



Futsch (futsch):

Annotation Number : CG3064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259108
Gbrowse : chrX:1326213-1343049 (+) // 100.0 //
Probeset : 1634163_at
Accessions : protein= NP_001096864; /// NP_001162632;, nucleotide= NM_001103394; /// NM_001169161;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0259108.
TRiP has 1 RNAi stocks for FBgn0259108 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 11 of 4 1.60None
Head5 20 of 4 0.70None
Eye8 31 of 4 1.01None
Thoracicoabdominal ganglion17 12 of 4 2.20Up
Salivary gland19 70 of 4 2.31None
Crop9 10 of 4 1.20None
Midgut18 10 of 4 2.30Up
Tubule5 00 of 4 0.60Down
Hindgut5 10 of 4 0.60None
Heart1 00 of 4 0.14None
Fat body6 40 of 4 0.76None
Ovary4 00 of 4 0.50None
Testis5 10 of 4 0.70None
Male accessory glands7 30 of 4 0.80None
Virgin spermatheca1 00 of 4 0.22None
Mated spermatheca1 00 of 4 0.15None
Adult carcass7 10 of 4 1.00None
Larval CNS9 10 of 4 1.09None
Larval Salivary gland9 20 of 4 1.12None
Larval midgut10 30 of 4 1.30None
Larval tubule6 20 of 4 0.80None
Larval hindgut3 10 of 4 0.46None
Larval fat body3 00 of 4 0.40None
Larval trachea3 20 of 4 0.38None
Larval carcass7 10 of 4 0.89None
S2 cells (growing)5 00 of 4 0.67None
Whole fly8 20 of 4

Looking for FBgn0259108. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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