FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259108 through 18771 annotations produced 2 hits

Futsch (futsch):

Annotation Number : GH26828
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259108
Gbrowse : chrX:1343109-1345426 (+) // 100.0 //
Probeset : 1638205_s_at
Accessions : protein= NP_001096864; /// NP_001162632;, nucleotide= NM_001103394; /// NM_001169161;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0259108.
TRiP has 1 RNAi stocks for FBgn0259108 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259108 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	571 ± 24	4 of 4	22.60	Up
Head	159 ± 17	4 of 4	6.30	Up
Eye	481 ± 61	4 of 4	19.06	Up
Thoracicoabdominal ganglion	857 ± 54	4 of 4	33.90	Up
Salivary gland	17 ± 2	0 of 4	0.70	None
Crop	9 ± 1	0 of 4	0.40	Down
Midgut	2 ± 1	0 of 4	0.10	Down
Tubule	3 ± 0	0 of 4	0.10	Down
Hindgut	2 ± 1	0 of 4	0.10	Down
Heart	8 ± 1	0 of 4	0.36	Down
Fat body	12 ± 5	0 of 4	0.50	Down
Ovary	4 ± 0	0 of 4	0.20	Down
Testis	2 ± 0	1 of 4	0.10	Down
Male accessory glands	7 ± 4	0 of 4	0.30	Down
Virgin spermatheca	11 ± 1	0 of 4	0.45	Down
Mated spermatheca	11 ± 3	0 of 4	0.45	Down
Adult carcass	23 ± 3	3 of 4	0.90	None
Larval CNS	296 ± 15	4 of 4	11.72	Up
Larval Salivary gland	4 ± 1	0 of 4	0.19	Down
Larval midgut	3 ± 1	0 of 4	0.14	Down
Larval tubule	3 ± 1	0 of 4	0.10	Down
Larval hindgut	3 ± 1	0 of 4	0.14	Down
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	14 ± 9	1 of 4	0.57	None
Larval carcass	10 ± 0	1 of 4	0.43	Down
S2 cells (growing)	8 ± 1	0 of 4	0.34	Down
Whole fly	25 ± 3	4 of 4

Futsch (futsch):

Annotation Number : CG3064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259108
Gbrowse : chrX:1326213-1343049 (+) // 100.0 //
Probeset : 1634163_at
Accessions : protein= NP_001096864; /// NP_001162632;, nucleotide= NM_001103394; /// NM_001169161;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0259108.
TRiP has 1 RNAi stocks for FBgn0259108 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259108 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	1 of 4	1.60	None
Head	5 ± 2	0 of 4	0.70	None
Eye	8 ± 3	1 of 4	1.01	None
Thoracicoabdominal ganglion	17 ± 1	2 of 4	2.20	Up
Salivary gland	19 ± 7	0 of 4	2.31	None
Crop	9 ± 1	0 of 4	1.20	None
Midgut	18 ± 1	0 of 4	2.30	Up
Tubule	5 ± 0	0 of 4	0.60	Down
Hindgut	5 ± 1	0 of 4	0.60	None
Heart	1 ± 0	0 of 4	0.14	None
Fat body	6 ± 4	0 of 4	0.76	None
Ovary	4 ± 0	0 of 4	0.50	None
Testis	5 ± 1	0 of 4	0.70	None
Male accessory glands	7 ± 3	0 of 4	0.80	None
Virgin spermatheca	1 ± 0	0 of 4	0.22	None
Mated spermatheca	1 ± 0	0 of 4	0.15	None
Adult carcass	7 ± 1	0 of 4	1.00	None
Larval CNS	9 ± 1	0 of 4	1.09	None
Larval Salivary gland	9 ± 2	0 of 4	1.12	None
Larval midgut	10 ± 3	0 of 4	1.30	None
Larval tubule	6 ± 2	0 of 4	0.80	None
Larval hindgut	3 ± 1	0 of 4	0.46	None
Larval fat body	3 ± 0	0 of 4	0.40	None
Larval trachea	3 ± 2	0 of 4	0.38	None
Larval carcass	7 ± 1	0 of 4	0.89	None
S2 cells (growing)	5 ± 0	0 of 4	0.67	None
Whole fly	8 ± 2	0 of 4

Looking for FBgn0259108. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720