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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259110 through 18771 annotations produced 2 hits



CG15603 (mmd):

Annotation Number : S.CX001768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259110
Gbrowse : chrX:15858391-15860571 (-) // 100.0 //
Probeset : 1630103_at
Accessions : protein= NP_001138200; /// NP_523358; /// NP_996475;, nucleotide= NM_001144728; /// NM_078634; /// NM_206752;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0259110.
VDRC has 10 RNAi stocks for FBgn0259110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 410.40Up
Head4 ± 11 of 4 2.20None
Eye3 ± 10 of 4 1.95None
Thoracicoabdominal ganglion15 ± 24 of 4 7.70Up
Salivary gland5 ± 00 of 4 2.83Up
Crop2 ± 10 of 4 1.10None
Midgut2 ± 10 of 4 1.40None
Tubule3 ± 00 of 4 1.60Up
Hindgut1 ± 00 of 4 0.70None
Heart2 ± 10 of 4 1.09None
Fat body3 ± 20 of 4 1.51None
Ovary1 ± 00 of 4 0.60None
Testis1 ± 01 of 4 0.80None
Male accessory glands6 ± 10 of 4 3.00None
Virgin spermatheca4 ± 00 of 4 2.30None
Mated spermatheca3 ± 00 of 4 1.79None
Adult carcass9 ± 00 of 4 4.50Up
Larval CNS5 ± 22 of 4 2.89Up
Larval Salivary gland2 ± 00 of 4 1.09None
Larval midgut2 ± 10 of 4 1.26None
Larval tubule4 ± 10 of 4 2.10None
Larval hindgut3 ± 00 of 4 1.47None
Larval fat body6 ± 20 of 4 3.10None
Larval trachea2 ± 20 of 4 1.21None
Larval carcass3 ± 10 of 4 1.90None
S2 cells (growing)1 ± 00 of 4 0.49None
Whole fly2 ± 00 of 4



CG15603 (mmd):

Annotation Number : CG9163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259110
Gbrowse : chrX:15842399-15859006 (-) // 100.0 //
Probeset : 1638913_at
Accessions : protein= NP_001138200; /// NP_523358; /// NP_996475;, nucleotide= NM_001144728; /// NM_078634; /// NM_206752;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0259110.
Homophila reports that CG9163 is a close match (8e-12) to human gene ADAMTS10;WMS (NP_112219), a gene associated with Weill-Marchesani syndrome, recessive, 277600 (3).
VDRC has 10 RNAi stocks for FBgn0259110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 ± 84 of 471.00Up
Head21 ± 32 of 410.50Up
Eye76 ± 74 of 436.77Up
Thoracicoabdominal ganglion84 ± 164 of 440.80Up
Salivary gland5 ± 10 of 4 2.51None
Crop1 ± 00 of 4 0.50None
Midgut2 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 0.90None
Hindgut2 ± 10 of 4 1.30None
Heart2 ± 10 of 4 1.28None
Fat body2 ± 20 of 4 1.41None
Ovary0 ± 00 of 4 0.30Down
Testis1 ± 00 of 4 0.70None
Male accessory glands3 ± 10 of 4 1.60None
Virgin spermatheca0 ± 00 of 4 0.45None
Mated spermatheca2 ± 00 of 4 1.04None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS34 ± 54 of 416.46Up
Larval Salivary gland2 ± 00 of 4 1.07None
Larval midgut3 ± 10 of 4 1.42None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.96None
Larval fat body1 ± 00 of 4 0.90None
Larval trachea4 ± 10 of 4 2.05None
Larval carcass1 ± 00 of 4 0.89None
S2 cells (growing)2 ± 00 of 4 1.23None
Whole fly2 ± 00 of 4

Looking for FBgn0259110. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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