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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259113 through 18771 annotations produced 1 hits



DNA polymerase 180K (DNApol-alpha180):

Annotation Number : CG6349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259113
Gbrowse : chr3R:17492274-17497472 (-) // 100.0 //
Probeset : 1633249_at
Accessions : protein= NP_536736;, nucleotide= NM_080488;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication //
FlyMine data for FBgn0259113.
VDRC has 2 RNAi stocks for FBgn0259113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.00Down
Head11 00 of 4 0.10Down
Eye3 10 of 4 0.04Down
Thoracicoabdominal ganglion7 10 of 4 0.10Down
Salivary gland6 40 of 4 0.06Down
Crop7 20 of 4 0.10Down
Midgut21 20 of 4 0.20Down
Tubule6 30 of 4 0.10Down
Hindgut16 20 of 4 0.20Down
Heart2 00 of 4 0.03Down
Fat body12 80 of 4 0.12Down
Ovary218 34 of 4 2.20Up
Testis14 03 of 4 0.10Down
Male accessory glands8 20 of 4 0.10Down
Virgin spermatheca11 11 of 4 0.11Down
Mated spermatheca8 00 of 4 0.08Down
Adult carcass15 40 of 4 0.20Down
Larval CNS112 84 of 4 1.12None
Larval Salivary gland88 34 of 4 0.88None
Larval midgut23 20 of 4 0.23Down
Larval tubule13 20 of 4 0.10Down
Larval hindgut44 34 of 4 0.44Down
Larval fat body14 30 of 4 0.10Down
Larval trachea48 54 of 4 0.49Down
Larval carcass53 44 of 4 0.53Down
S2 cells (growing)116 44 of 4 1.16None
Whole fly100 74 of 4

Looking for FBgn0259113. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime