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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259139 through 18771 annotations produced 1 hits



glorund (glo):

Annotation Number : CG6946
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259139
Gbrowse : chr3R:7640921-7645142 (-) // 100.0 //
Probeset : 1641170_a_at
Accessions : protein= NP_650120; /// NP_731639; /// NP_731640;, nucleotide= NM_141863; /// NM_169434; /// NM_169435;
Pathway : oocyte
Interpro : germ-line encoded // inferred from mutant phenotype /// 0045451 // pole plasm oskar mRNA localization // inferred from
FlyMine data for FBgn0259139.
BioGrid reports that CG6946 interacts with CG7399 CG8597 CG8942 CG9173 CG9373 .
TRiP has 2 RNAi stocks for FBgn0259139 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259139 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain836 334 of 4 2.60Up
Head350 94 of 4 1.10None
Eye276 94 of 4 0.87None
Thoracicoabdominal ganglion529 154 of 4 1.70Up
Salivary gland392 274 of 4 1.24None
Crop286 44 of 4 0.90None
Midgut223 104 of 4 0.70Down
Tubule573 54 of 4 1.80Up
Hindgut319 64 of 4 1.00None
Heart155 84 of 4 0.49Down
Fat body154 264 of 4 0.49Down
Ovary703 224 of 4 2.20Up
Testis164 74 of 4 0.50Down
Male accessory glands338 144 of 4 1.10None
Virgin spermatheca215 84 of 4 0.68Down
Mated spermatheca205 94 of 4 0.65Down
Adult carcass202 74 of 4 0.60Down
Larval CNS1062 234 of 4 3.36Up
Larval Salivary gland460 114 of 4 1.46Up
Larval midgut131 74 of 4 0.41Down
Larval tubule336 224 of 4 1.10None
Larval hindgut312 104 of 4 0.99None
Larval fat body289 114 of 4 0.90None
Larval trachea435 514 of 4 1.38Up
Larval carcass340 264 of 4 1.07None
S2 cells (growing)560 134 of 4 1.77Up
Whole fly316 144 of 4

Looking for FBgn0259139. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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